Man pages for jpinfect
Acquiring and Processing Data from Japan Institute for Health Security

bulletBullet report Data
dot-col_join_renamePrepare Column Names for Renaming Based on Dataset Type
dot-col_renameClean and Format Column Names
dot-col_rename_bulletClean and Format Column Names for bullet reports
dot-jpinfect_read_excelProcess a Single Excel File
dot-jpinfect_read_excelsProcess Multiple Excel Files
dot-ncol_checkCheck Column Count to Classify Dataset Type
jpinfect_get_bulletDownload the bullet reports from the Japan Institute for...
jpinfect_get_confirmedDownload the confirmed case datasets from the Japan Institute...
jpinfect_mergeMerge multiple disease datasets into a unified data table
jpinfect-packagejpinfect: Japan Institute for Health Security Infectious...
jpinfect_pivotConvert data from wide format to long format for easier...
jpinfect_read_bulletImport one week or more weeks of bullet reports
jpinfect_read_confirmedRead Confirmed Case Reports from File or Directory
jpinfect_url_bulletDisplay Infectious Diseases Weekly Report (IDWR) URLs
jpinfect_url_confirmedDisplay dataset URLs of Confirmed Cases based on Infectious...
place_prefecturePlace Prefecture Data
prefecture_enEnglish Names of Prefectures in Japan
sex_prefectureSex Prefecture Data
jpinfect documentation built on Feb. 24, 2026, 1:07 a.m.