These functions calculate the taxonomic measures presented in Miranda-Esquivel (2016). The package introduces Jack-knife resampling in evolutionary distinctiveness prioritization analysis, as a way to evaluate the support of the ranking in area prioritization, and the persistence of a given area in a conservation analysis. The algorithm is described in: Miranda-Esquivel, D (2016) <DOI:10.1007/978-3-319-22461-9_11>.

Install the latest version of this package by entering the following in R:

`install.packages("jrich")`

Author | Daniel R. Miranda-Esquivel |

Date of publication | 2016-03-06 17:50:38 |

Maintainer | Daniel R. Miranda-Esquivel <dmiranda@uis.edu.co> |

License | GPL-3 |

Version | 0.60-35 |

https://github.com/Dmirandae/jrich |

**Best.Index:** Jack-knife indices in a single topology m times and evaluates...

**Calculate.Index:** Indices values and Jack-knife indices for a single topology.

**Children:** Children of a node.

**distribution:** Distribution of five taxa.

**IndexI:** I index value for a single topology.

**IndexW:** W index value for a single topology.

**Multi.Index.Calc:** Jack-knife indices in n topologies one time.

**Multi.Jack:** Jack-knife indices in n topologies m times.

**Multitaxon1:** Multitaxon example.

**Rank.Indices:** Rank indices.

**Read.Data:** Read distributions.

**Sum.Indices.2.Topologies:** Sums two tables with indices values.

**taxon1:** A tree and the distribution of the taxa.

**tree:** A tree with five terminals.

inst

inst/exdata

inst/exdata/Janus.tre

inst/exdata/puranius.tre

inst/exdata/puranius.csv.gz

inst/exdata/Janus.csv.gz

inst/CITATION

inst/doc

inst/doc/jrich-workedExample.pdf

inst/doc/jrich-workedExample.Rmd

inst/doc/jrich-workedExample.html

NAMESPACE

data

data/Multitaxon1.rda

data/tree.rda

data/taxon1.rda

data/distribution.rda

R

R/Best.Index.R
R/IndexI.R
R/taxon1.R
R/IndexW.R
R/Calculate.Index.R
R/Multi.Index.Calc.R
R/Rank.Indices.R
R/Multi.Jack.R
R/Read.data.R
R/Multitaxon1.R
R/Children.R
R/distribution.R
R/tree.R
R/Sum.indices.2.topologies.R
MD5

DESCRIPTION

man

man/Best.Index.Rd
man/Multi.Index.Calc.Rd
man/Read.Data.Rd
man/IndexW.Rd
man/Calculate.Index.Rd
man/Children.Rd
man/Multi.Jack.Rd
man/IndexI.Rd
man/Sum.Indices.2.Topologies.Rd
man/distribution.Rd
man/Multitaxon1.Rd
man/taxon1.Rd
man/Rank.Indices.Rd
man/tree.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.

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