These functions calculate the taxonomic measures presented in MirandaEsquivel (2016).
The package introduces Jackknife resampling in evolutionary distinctiveness prioritization analysis,
as a way to evaluate the support of the ranking in area prioritization, and the persistence of a given area
in a conservation analysis.
The algorithm is described in: MirandaEsquivel, D (2016)
Author  Daniel R. MirandaEsquivel 
Date of publication  20160306 17:50:38 
Maintainer  Daniel R. MirandaEsquivel <dmiranda@uis.edu.co> 
License  GPL3 
Version  0.6035 
URL  https://github.com/Dmirandae/jrich 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:

All man pages Function index File listing
Man pages  

Best.Index: Jackknife indices in a single topology m times and evaluates...  
Calculate.Index: Indices values and Jackknife indices for a single topology.  
Children: Children of a node.  
distribution: Distribution of five taxa.  
IndexI: I index value for a single topology.  
IndexW: W index value for a single topology.  
Multi.Index.Calc: Jackknife indices in n topologies one time.  
Multi.Jack: Jackknife indices in n topologies m times.  
Multitaxon1: Multitaxon example.  
Rank.Indices: Rank indices.  
Read.Data: Read distributions.  
Sum.Indices.2.Topologies: Sums two tables with indices values.  
taxon1: A tree and the distribution of the taxa.  
tree: A tree with five terminals. 
Functions  

Best.Index  Man page Source code 
Calculate.Index  Man page Source code 
Children  Man page Source code 
IndexI  Man page Source code 
IndexW  Man page Source code 
Multi.Index.Calc  Man page Source code 
Multi.Jack  Man page Source code 
Multitaxon1  Man page 
Rank.Indices  Man page Source code 
Read.Data  Man page Source code 
Sum.Indices.2.Topologies  Man page Source code 
distribution  Man page 
taxon1  Man page 
tree  Man page 
Files  

inst
 
inst/exdata
 
inst/exdata/Janus.tre
 
inst/exdata/puranius.tre
 
inst/exdata/puranius.csv.gz
 
inst/exdata/Janus.csv.gz
 
inst/CITATION
 
inst/doc
 
inst/doc/jrichworkedExample.pdf
 
inst/doc/jrichworkedExample.Rmd  
inst/doc/jrichworkedExample.html
 
NAMESPACE
 
data
 
data/Multitaxon1.rda
 
data/tree.rda
 
data/taxon1.rda
 
data/distribution.rda
 
R
 
R/Best.Index.R  
R/IndexI.R  
R/taxon1.R  
R/IndexW.R  
R/Calculate.Index.R  
R/Multi.Index.Calc.R  
R/Rank.Indices.R  
R/Multi.Jack.R  
R/Read.data.R  
R/Multitaxon1.R  
R/Children.R  
R/distribution.R  
R/tree.R  
R/Sum.indices.2.topologies.R  
MD5
 
DESCRIPTION
 
man
 
man/Best.Index.Rd  
man/Multi.Index.Calc.Rd  
man/Read.Data.Rd  
man/IndexW.Rd  
man/Calculate.Index.Rd  
man/Children.Rd  
man/Multi.Jack.Rd  
man/IndexI.Rd  
man/Sum.Indices.2.Topologies.Rd  
man/distribution.Rd  
man/Multitaxon1.Rd  
man/taxon1.Rd  
man/Rank.Indices.Rd  
man/tree.Rd 
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