jrich: Jack-Knife Support for Evolutionary Distinctiveness Indices I and W
Version 0.60-35

These functions calculate the taxonomic measures presented in Miranda-Esquivel (2016). The package introduces Jack-knife resampling in evolutionary distinctiveness prioritization analysis, as a way to evaluate the support of the ranking in area prioritization, and the persistence of a given area in a conservation analysis. The algorithm is described in: Miranda-Esquivel, D (2016) .

AuthorDaniel R. Miranda-Esquivel
Date of publication2016-03-06 17:50:38
MaintainerDaniel R. Miranda-Esquivel <dmiranda@uis.edu.co>
LicenseGPL-3
Version0.60-35
URL https://github.com/Dmirandae/jrich
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("jrich")

Popular man pages

Best.Index: Jack-knife indices in a single topology m times and evaluates...
Calculate.Index: Indices values and Jack-knife indices for a single topology.
Children: Children of a node.
IndexW: W index value for a single topology.
Multi.Index.Calc: Jack-knife indices in n topologies one time.
Multitaxon1: Multitaxon example.
tree: A tree with five terminals.
See all...

All man pages Function index File listing

Man pages

Best.Index: Jack-knife indices in a single topology m times and evaluates...
Calculate.Index: Indices values and Jack-knife indices for a single topology.
Children: Children of a node.
distribution: Distribution of five taxa.
IndexI: I index value for a single topology.
IndexW: W index value for a single topology.
Multi.Index.Calc: Jack-knife indices in n topologies one time.
Multi.Jack: Jack-knife indices in n topologies m times.
Multitaxon1: Multitaxon example.
Rank.Indices: Rank indices.
Read.Data: Read distributions.
Sum.Indices.2.Topologies: Sums two tables with indices values.
taxon1: A tree and the distribution of the taxa.
tree: A tree with five terminals.

Functions

Best.Index Man page Source code
Calculate.Index Man page Source code
Children Man page Source code
IndexI Man page Source code
IndexW Man page Source code
Multi.Index.Calc Man page Source code
Multi.Jack Man page Source code
Multitaxon1 Man page
Rank.Indices Man page Source code
Read.Data Man page Source code
Sum.Indices.2.Topologies Man page Source code
distribution Man page
taxon1 Man page
tree Man page

Files

inst
inst/exdata
inst/exdata/Janus.tre
inst/exdata/puranius.tre
inst/exdata/puranius.csv.gz
inst/exdata/Janus.csv.gz
inst/CITATION
inst/doc
inst/doc/jrich-workedExample.pdf
inst/doc/jrich-workedExample.Rmd
inst/doc/jrich-workedExample.html
NAMESPACE
data
data/Multitaxon1.rda
data/tree.rda
data/taxon1.rda
data/distribution.rda
R
R/Best.Index.R
R/IndexI.R
R/taxon1.R
R/IndexW.R
R/Calculate.Index.R
R/Multi.Index.Calc.R
R/Rank.Indices.R
R/Multi.Jack.R
R/Read.data.R
R/Multitaxon1.R
R/Children.R
R/distribution.R
R/tree.R
R/Sum.indices.2.topologies.R
MD5
DESCRIPTION
man
man/Best.Index.Rd
man/Multi.Index.Calc.Rd
man/Read.Data.Rd
man/IndexW.Rd
man/Calculate.Index.Rd
man/Children.Rd
man/Multi.Jack.Rd
man/IndexI.Rd
man/Sum.Indices.2.Topologies.Rd
man/distribution.Rd
man/Multitaxon1.Rd
man/taxon1.Rd
man/Rank.Indices.Rd
man/tree.Rd
jrich documentation built on May 19, 2017, 2:47 p.m.

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