jtGWAS: Efficient Jonckheere-Terpstra Test Statistics

The core of this 'Rcpp' based package is a function to compute standardized Jonckheere-Terpstra test statistics for large numbers of dependent and independent variables, e.g., genome-wide analysis. It implements 'OpenMP', allowing the option of computing on multiple threads. Supporting functions are also provided to calculate p-values and summarize results.

Author
Jiaxing Lin, Alexander Sibley, Ivo Shterev, and Kouros Owzar
Date of publication
2016-07-07 22:01:51
Maintainer
Jiaxing Lin <jiaxing.lin@duke.edu>
License
GPL (>= 2)
Version
1.4
URLs

View on CRAN

Man pages

jtGWAS
Compute the Jonckheere-Terpstra Test Statistics
jtGWAS-package
Efficient Jonckheere-Terpstra Test Statistics
pvalues
Compute P-values Based on Jonckheere-Terpstra Test Statistics
summary.jtGWAS
Summarize Jonckheere-Terpstra Test Statistics and P-Values

Files in this package

jtGWAS
jtGWAS/inst
jtGWAS/inst/doc
jtGWAS/inst/doc/jtGWAS.R
jtGWAS/inst/doc/jtGWAS.pdf
jtGWAS/inst/doc/jtGWAS.Rnw
jtGWAS/src
jtGWAS/src/pairCompare.h
jtGWAS/src/Makevars
jtGWAS/src/jtGWAS.cpp
jtGWAS/src/JTscoreMP.h
jtGWAS/src/JTscore.h
jtGWAS/src/pairCompareMP.h
jtGWAS/src/jtGWASmp.cpp
jtGWAS/src/Makevars.win
jtGWAS/src/RcppExports.cpp
jtGWAS/NAMESPACE
jtGWAS/NEWS
jtGWAS/R
jtGWAS/R/jtGWAS.R
jtGWAS/R/pvalues.R
jtGWAS/R/summary.jtGWAS.R
jtGWAS/vignettes
jtGWAS/vignettes/jtGWAS.Rnw
jtGWAS/MD5
jtGWAS/build
jtGWAS/build/vignette.rds
jtGWAS/DESCRIPTION
jtGWAS/man
jtGWAS/man/summary.jtGWAS.Rd
jtGWAS/man/jtGWAS-package.Rd
jtGWAS/man/pvalues.Rd
jtGWAS/man/jtGWAS.Rd