jtGWAS: Efficient Jonckheere-Terpstra Test Statistics

The core of this 'Rcpp' based package is a function to compute standardized Jonckheere-Terpstra test statistics for large numbers of dependent and independent variables, e.g., genome-wide analysis. It implements 'OpenMP', allowing the option of computing on multiple threads. Supporting functions are also provided to calculate p-values and summarize results.

AuthorJiaxing Lin, Alexander Sibley, Ivo Shterev, and Kouros Owzar
Date of publication2017-02-20 23:59:27
MaintainerJiaxing Lin <jiaxing.lin@duke.edu>
LicenseGPL (>= 2)
Version1.5
https://bitbucket.org/impactp01/jtgwas

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Files

jtGWAS
jtGWAS/inst
jtGWAS/inst/doc
jtGWAS/inst/doc/jtGWAS.R
jtGWAS/inst/doc/jtGWAS.pdf
jtGWAS/inst/doc/jtGWAS.Rnw
jtGWAS/src
jtGWAS/src/pairCompare.h
jtGWAS/src/Makevars
jtGWAS/src/jtGWAS.cpp
jtGWAS/src/JTscoreMP.h
jtGWAS/src/JTscore.h
jtGWAS/src/pairCompareMP.h
jtGWAS/src/jtGWASmp.cpp
jtGWAS/src/Makevars.win
jtGWAS/src/init.c
jtGWAS/src/RcppExports.cpp
jtGWAS/NAMESPACE
jtGWAS/NEWS
jtGWAS/R
jtGWAS/R/jtGWAS.R jtGWAS/R/pvalues.R jtGWAS/R/summary.jtGWAS.R
jtGWAS/vignettes
jtGWAS/vignettes/jtGWAS.Rnw
jtGWAS/MD5
jtGWAS/build
jtGWAS/build/vignette.rds
jtGWAS/DESCRIPTION
jtGWAS/man
jtGWAS/man/summary.jtGWAS.Rd jtGWAS/man/jtGWAS-package.Rd jtGWAS/man/pvalues.Rd jtGWAS/man/jtGWAS.Rd

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