Description Usage Arguments Value Author(s)
Performs a complete kdetrees analysis, starting with reading trees from a newick file on disk, and writing result files to the working directory. Names and location of output files may be controlled by optional arguments.
1 2 | kdetrees.complete(infile, ..., treeoutfile = "outliers.tre",
csvfile = "results.csv", plotfile = "plot.png", histfile = "hist.png")
|
infile |
newick file with trees |
... |
additional parameters for kdetrees |
treeoutfile |
write outlier trees in newick format to this file |
csvfile |
write density results to this file |
plotfile |
print scatterplot of results to this file |
histfile |
print histogram of density estimates to this file |
result of kdetrees call
Grady Weyenberg
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