kgpe: 1000 Genomes Project sample data (Expanded)

In kgp: 1000 Genomes Project Metadata

1000 Genomes Project sample data (Expanded)

Description

Sample, pedigree, and population data for 3,202 samples in the expanded 1000 Genomes Project data.

Usage

kgpe

Format

A tibble with 3202 rows and 11 columns:

fid

Family ID

id

Individual ID

pid

Paternal ID

mid

Maternal ID

sex

Sex (1=Male, 2=Female)

sexf

Sex as a factor

pop

Short population code

reg

Short region code

population

Long population description

region

Long region description

phase3

Logical; indicates whether this sample is included in the Phase 3 release data

Source

http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/

References

Byrska-Bishop, Marta, et al. "High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios." Cell 185.18 (2022): 3426-3440.

1000 Genomes Project Consortium. "A global reference for human genetic variation." Nature 526.7571 (2015): 68.

License information is available at https://github.com/igsr/1000Genomes_data_indexes/blob/master/LICENSE. The 1000 Genomes data is made publicly available according to the Fort Lauderdale Agreement (https://www.genome.gov/Pages/Research/WellcomeReport0303.pdf).

kgp documentation built on Dec. 28, 2022, 1:17 a.m.