kin.cohort: Analysis of Kin-Cohort Studies

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Analysis of kin-cohort studies. kin.cohort provides estimates of age-specific cumulative risk of a disease for carriers and noncarriers of a mutation. The cohorts are retrospectively built from relatives of probands for whom the genotype is known. Currently the method of moments and marginal maximum likelihood are implemented. Confidence intervals are calculated from bootstrap samples. Most of the code is a translation from previous 'MATLAB' code by N. Chatterjee.

Author
Victor Moreno, Nilanjan Chatterjee, Bhramar Mukherjee
Date of publication
2015-08-28 16:36:59
Maintainer
Victor Moreno <v.moreno@iconcologia.net>
License
GPL (>= 2)
Version
0.7

View on CRAN

Man pages

kc.marginal
Marginal Maximum Likelihood estimation of kin-cohort data
kc.moments
Kin-cohort estimation of penetrance by the method of moments
kin.cohort
Analysis of kin-cohort data
kin.data
sample data for kin-cohort analysis
methods
methods for print and plot
simulations
simulation of kin cohort studies
zinternal
Internal functions for marginal method

Files in this package

kin.cohort
kin.cohort/inst
kin.cohort/inst/ChangeLog
kin.cohort/inst/WishList
kin.cohort/NAMESPACE
kin.cohort/data
kin.cohort/data/kin.data.rda
kin.cohort/R
kin.cohort/R/kc.simul.R
kin.cohort/R/kc.moments.R
kin.cohort/R/sample.caco.R
kin.cohort/R/print.kin.cohort.R
kin.cohort/R/kin.cohort.R
kin.cohort/R/print.kin.cohort.boot.R
kin.cohort/R/pwexp.R
kin.cohort/R/mendelian.R
kin.cohort/R/mendelian.combine.R
kin.cohort/R/plot.kin.cohort.R
kin.cohort/R/summary.kin.cohort.sample.R
kin.cohort/R/plot.kin.cohort.boot.R
kin.cohort/R/kc.marginal.R
kin.cohort/R/pyear.R
kin.cohort/MD5
kin.cohort/DESCRIPTION
kin.cohort/man
kin.cohort/man/zinternal.Rd
kin.cohort/man/kc.marginal.Rd
kin.cohort/man/kc.moments.Rd
kin.cohort/man/simulations.Rd
kin.cohort/man/kin.data.Rd
kin.cohort/man/kin.cohort.Rd
kin.cohort/man/methods.Rd