mentari: Position & kinship information of _Aedes aegypti_ from...
In kindisperse: Simulate and Estimate Close-Kin Dispersal Kernels

Description Usage Format Details Value Source

A data file containing the positions & kinship values of 98 Ae. aegypti larval kin pairs collected between September 19 & October 10, 2017 in Mentari Court (Petaling Jaya), Malaysia.

mentari

A data frame with 98 rows and 10 variables

id1: id of first individual of kinpair
id2: id of second individual of kinpair
kinship: kinship category of the pairing
distance: geographical distance between kinpair
x1: relative x coordinate of first individual in metres
y1: relative y coordinate of first individual in metres
x2: relative x coordinate of second individual in metres
y2: relative y coordinate of second individual in metres
lifestage: lifestage at time of sampling of kinpair
k_loiselle: calculated Loiselle's k value for kinpair

162 individuals were sourced as larvae from ovitraps placed in eight apartment buildings (in floors three or four for each), collected over three weeks. Entire larval bodies were extracted and sequenced using the double-digest restriction-site- associated DNA sequencing protocol for Ae. aegypti (doi: 10.1186/1471-2164-15-275. After sequencing & genotyping, Loiselle's k was used as an initial estimate of genetic kinship. The program ML-Relate (doi: 10.1111/j.1471-8286.2006.01256.x) was then used to estimate the pedigree kinships for the FS and HS categories. Following simulation work described in doi: 10.1111/1755-0998.13043 the 1C category was assigned to all remaining unassigned individuals with a Loiselle's k of less than 0.06.

returns an object of class tbl_df

doi: 10.1111/1755-0998.13043

kindisperse documentation built on July 28, 2021, 5:09 p.m.