kmeRs_statistics: Calculate And Add Basic Statistics To The K-mers Similarity...
In kmeRs: K-Mers Similarity Score Matrix

Description Usage Arguments Value Examples

View source: R/kmeRs_statistics.R

The kmeRs_statistics function calculates basic statistics and returns the similarity matrix with calculated results or summarized table with statistics only when summary_statistics_only is set to TRUE

1 2	kmeRs_statistics(kmeRs_similarity_matrix, summary_statistics_only = FALSE)

`kmeRs_similarity_matrix`	matrix calculated by `kmeRs_similarity_matrix` function
`summary_statistics_only`	when parameter is set to TRUE only the summarized table with statistics is returned

data.frame with results

# Simple BLOSUM62 similarity matrix for DNA nucleotides
example  <- kmeRs_similarity_matrix(kmers_given = c("A", "T", "C", "G"), submat = "BLOSUM62")

# Result as a full matrix
kmeRs_statistics(example)

# Result a summary statistics table
kmeRs_statistics(example, summary_statistics_only = TRUE)