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Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.
Package details |
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Author | Shaun Wilkinson [aut, cre] |
Maintainer | Shaun Wilkinson <shaunpwilkinson@gmail.com> |
License | GPL-3 |
Version | 1.1.2 |
URL | http://github.com/shaunpwilkinson/kmer |
Package repository | View on CRAN |
Installation |
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