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Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignmentfree kmer counting and recursive kmeans partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of kmer counting methods and applications for biological sequence analysis.
Package details 


Author  Shaun Wilkinson [aut, cre] 
Maintainer  Shaun Wilkinson <[email protected]> 
License  GPL3 
Version  1.1.0 
URL  http://github.com/shaunpwilkinson/kmer 
Package repository  View on CRAN 
Installation 
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