kmer: Fast K-Mer Counting and Clustering for Biological Sequence Analysis

Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.

Package details

AuthorShaun Wilkinson [aut, cre]
MaintainerShaun Wilkinson <>
Package repositoryView on CRAN
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kmer documentation built on May 20, 2019, 9:02 a.m.