kml3d: K-Means for Joint Longitudinal Data

Share:

An implementation of k-means specifically design to cluster joint trajectories (longitudinal data on several variable-trajectories). Like 'kml', it provides facilities to deal with missing value, compute several quality criterion (Calinski and Harabatz, Ray and Turie, Davies and Bouldin, BIC,...) and propose a graphical interface for choosing the 'best' number of clusters. In addition, the 3D graph representing the mean joint-trajectories of each cluster can be exported through LaTeX in a 3D dynamic rotating PDF graph.

Author
Christophe Genolini [cre, aut], Bruno Falissard [ctb], Jean-Baptiste Pingault [ctb]
Date of publication
2016-02-16 16:15:26
Maintainer
Christophe Genolini <christophe.genolini@u-paris10.fr>
License
GPL (>= 2)
Version
2.4.1
URLs

View on CRAN

Man pages

affectIndiv3d
~ Function: affectIndiv3d ~
calculTrajMean3d
~ Function: calculTrajMean3d ~
clusterLongData3d
~ Function: clusterLongData3d (or cld3d) ~
ClusterLongData3d-class
~ Class: ClusterLongData3d ~
dist3d
~ Function: dist3d ~
generateArtificialLongData3d
~ Function: generateArtificialLongData3d (or gald3d) ~
kml3d
~ Algorithm kml3d: K-means for Joint Longitidinal data ~
kml3d-package
~ Overview: KmL3D, K-means for joint Longitudinal data ~
parKml3d
~ Function: parKml3d ~
plot
~ Function: plot for ClusterLongData3d ~
plot3d
~ Function: plot3d for ClusterLongData3d ~
plot3dPdf
~ Function: plot3dPdf for ClusterLongData3d ~
plotMean3d
~ Function: plotMeans3d for ClusterLongData3d ~
plotTraj3d
~ Function: plotTraj3d for ClusterLongData3d ~
pregnandiol
~ Pregnandiol measure (from QUIDEL database, Ren<e9>...

Files in this package

kml3d
kml3d/inst
kml3d/inst/CITATION
kml3d/tests
kml3d/tests/testLongData.data.r
kml3d/tests/a.Rdata
kml3d/tests/CLD3-C5-1-Details.csv
kml3d/tests/clean.r
kml3d/tests/02_fromLongitudinalData.r
kml3d/tests/testClustering.r
kml3d/tests/01_testDistance3d.r
kml3d/tests/testParChoice.r
kml3d/tests/testFunction.r
kml3d/tests/testClustering.data.r
kml3d/tests/testParKml.r
kml3d/tests/object.Rdata
kml3d/tests/CLD3-C5-1-Clusters.csv
kml3d/tests/DatasetKML.csv
kml3d/tests/03_testClusterLongData3d.r
kml3d/tests/testListPartition.r
kml3d/tests/ma.Rdata
kml3d/tests/CLD3.Rdata
kml3d/tests/testLongData.r
kml3d/tests/testKml.r
kml3d/tests/04_testKml3d.r
kml3d/NAMESPACE
kml3d/data
kml3d/data/pregnandiol.csv.gz
kml3d/data/pregnandiol.rda
kml3d/data/pregnandiol.txt.gz
kml3d/R
kml3d/R/kml3d.r
kml3d/R/global.r
kml3d/R/distance3d.r
kml3d/R/clusterLongData3d.r
kml3d/MD5
kml3d/DESCRIPTION
kml3d/man
kml3d/man/plot3d.Rd
kml3d/man/plotTraj3d.Rd
kml3d/man/plotMean3d.Rd
kml3d/man/generateArtificialLongData3d.Rd
kml3d/man/parKml3d.Rd
kml3d/man/pregnandiol.Rd
kml3d/man/dist3d.Rd
kml3d/man/kml3d.Rd
kml3d/man/affectIndiv3d.Rd
kml3d/man/kml3d-package.Rd
kml3d/man/ClusterLongData3d-class.Rd
kml3d/man/clusterLongData3d.Rd
kml3d/man/plot3dPdf.Rd
kml3d/man/calculTrajMean3d.Rd
kml3d/man/plot.Rd