kml3d: K-Means for Joint Longitudinal Data

An implementation of k-means specifically design to cluster joint trajectories (longitudinal data on several variable-trajectories). Like 'kml', it provides facilities to deal with missing value, compute several quality criterion (Calinski and Harabatz, Ray and Turie, Davies and Bouldin, BIC,...) and propose a graphical interface for choosing the 'best' number of clusters. In addition, the 3D graph representing the mean joint-trajectories of each cluster can be exported through LaTeX in a 3D dynamic rotating PDF graph.

AuthorChristophe Genolini [cre, aut], Bruno Falissard [ctb], Jean-Baptiste Pingault [ctb]
Date of publication2016-02-16 16:15:26
MaintainerChristophe Genolini <christophe.genolini@u-paris10.fr>
LicenseGPL (>= 2)
Version2.4.1
http:www.r-project.org

View on CRAN

Functions

affectIndiv3d Man page
calculTrajMean3d Man page
cld3d Man page
clusterLongData3d Man page
clusterLongData3d,ANY,ANY,ANY,ANY,ANY,ANY Man page
clusterLongData3d,ANY,ANY,ANY,ANY,ANY,ANY-method Man page
[,ClusterLongData3d,ANY,missing-method Man page
[<-,ClusterLongData3d,character,missing,missing-method Man page
ClusterLongData3d-class Man page
[<-,ClusterLongData3d-method Man page
[,ClusterLongData3d-method Man page
clusterLongData3d,missing,missing,missing,missing,missing,missin Man page
clusterLongData3d,missing,missing,missing,missing,missing,missin Man page
dist3d Man page
gald3d Man page
generateArtificialLongData3d Man page
kml3d Man page
kml3d,ClusterLongData-method Man page
kml3d-method Man page
kml3d-package Man page
[<-,ParChoice-method Man page
[,ParChoice-method Man page
parKml3d Man page
plot Man page
plot3d Man page
plot3d,ClusterLongData3d-method Man page
plot3d,ClusterLongData3d,missing-method Man page
plot3d,ClusterLongData3d,numeric-method Man page
plot3d,ClusterLongData3d,Partition-method Man page
plot3dPdf Man page
plot3dPdf,ClusterLongData3d-method Man page
plot3dPdf,ClusterLongData3d,missing-method Man page
plot3dPdf,ClusterLongData3d,numeric-method Man page
plot,ClusterLongData3d Man page
plot,ClusterLongData3d,ANY-method Man page
plot,ClusterLongData3d,missing-method Man page
plot,ClusterLongData3d,numeric-method Man page
plot,ClusterLongData3d,Partition-method Man page
plotMeans3d Man page
plotMeans3d,ClusterLongData3d-method Man page
plotMeans3d,ClusterLongData3d,missing-method Man page
plotMeans3d,ClusterLongData3d,numeric-method Man page
plotMeans3d,ClusterLongData3d,Partition-method Man page
plotTraj3d Man page
plotTraj3d,ClusterLongData3d-method Man page
plotTraj3d,ClusterLongData3d,missing-method Man page
plotTraj3d,ClusterLongData3d,numeric-method Man page
plotTraj3d,ClusterLongData3d,Partition-method Man page
pregnandiol Man page
show,ClusterLongData3d-method Man page

Files

kml3d
kml3d/inst
kml3d/inst/CITATION
kml3d/tests
kml3d/tests/testLongData.data.r
kml3d/tests/a.Rdata
kml3d/tests/CLD3-C5-1-Details.csv
kml3d/tests/clean.r
kml3d/tests/02_fromLongitudinalData.r
kml3d/tests/testClustering.r
kml3d/tests/01_testDistance3d.r
kml3d/tests/testParChoice.r
kml3d/tests/testFunction.r
kml3d/tests/testClustering.data.r
kml3d/tests/testParKml.r
kml3d/tests/object.Rdata
kml3d/tests/CLD3-C5-1-Clusters.csv
kml3d/tests/DatasetKML.csv
kml3d/tests/03_testClusterLongData3d.r
kml3d/tests/testListPartition.r
kml3d/tests/ma.Rdata
kml3d/tests/CLD3.Rdata
kml3d/tests/testLongData.r
kml3d/tests/testKml.r
kml3d/tests/04_testKml3d.r
kml3d/NAMESPACE
kml3d/data
kml3d/data/pregnandiol.csv.gz
kml3d/data/pregnandiol.rda
kml3d/data/pregnandiol.txt.gz
kml3d/R
kml3d/R/kml3d.r
kml3d/R/global.r
kml3d/R/distance3d.r
kml3d/R/clusterLongData3d.r
kml3d/MD5
kml3d/DESCRIPTION
kml3d/man
kml3d/man/plot3d.Rd kml3d/man/plotTraj3d.Rd kml3d/man/plotMean3d.Rd kml3d/man/generateArtificialLongData3d.Rd kml3d/man/parKml3d.Rd kml3d/man/pregnandiol.Rd kml3d/man/dist3d.Rd kml3d/man/kml3d.Rd kml3d/man/affectIndiv3d.Rd kml3d/man/kml3d-package.Rd kml3d/man/ClusterLongData3d-class.Rd kml3d/man/clusterLongData3d.Rd kml3d/man/plot3dPdf.Rd kml3d/man/calculTrajMean3d.Rd kml3d/man/plot.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.