gg_kronos_acrogram: A plotting method for acrophase circleplots using 'ggplot2'.

In kronos: Microbiome Oriented Circadian Rhythm Analysis Toolkit

A plotting method for acrophase circleplots using 'ggplot2'.

Description

Wrapper around 'ggplot2' to make circadian circleplots.

Usage

gg_kronos_acrogram(kronosOutList)

Arguments

kronosOutList

A list of KronosOut output objects from the main kronos function.

Value

a 'ggplot2' compatible object.

Examples

#Load prepared data stored in Kronos library
data("kronos_demo")
output <- kronos(formula = Variable_1 ~ time(Timepoint), 
data = onevariable, period = 24, verbose = TRUE, pairwise = FALSE)

#Extracting data from the output object:
getKronos_fit(output)
getKronos_trace(output)
getKronos_groupwise(output)

#Plotting:
gg_kronos_circle(output)
gg_kronos_sinusoid(output)

#For high-dimensional data, use fw_kronos:
out_list = fw_kronos(x = bigdata[1:50,], formula = ~ Group + time(Timepoint), 
metadata = bigmeta, period = 24, verbose = FALSE, pairwise = TRUE) 

#Extracting data from the output object: 
kronosListToTable(out_list)


#Plotting:
gg_kronos_acrogram(out_list)

kronos documentation built on April 26, 2023, 9:11 a.m.