label.switching: Relabelling MCMC Outputs of Mixture Models
Version 1.6

The Bayesian estimation of mixture models (and more general hidden Markov models) suffers from the label switching phenomenon, making the MCMC output non-identifiable. This package can be used in order to deal with this problem using various relabelling algorithms.

Browse man pages Browse package API and functions Browse package files

AuthorPanagiotis Papastamoulis
Date of publication2016-05-22 15:01:28
MaintainerPanagiotis Papastamoulis <papapast@yahoo.gr>
LicenseGPL-2
Version1.6
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("label.switching")

Man pages

aic: Artificial Identifiability Constraints
compare.clust: Make all estimated clusters agree with a pivot allocation
dataBased: Data-based labelling
data_list: Simulated MCMC sample and related information
ecr: ECR algorithm (default version)
ecr.iterative.1: ECR algorithm (iterative version 1)
ecr.iterative.2: ECR algorithm (iterative version 2)
label.switching: Main calling function
label.switching-package: Algorithms for solving the label switching problem
lamb: Fetal lamb dataset
permute.mcmc: Reorder MCMC samples
pra: PRA algorithm
sjw: Probabilistic relabelling algorithm
stephens: Stephens' algorithm

Functions

aic Man page Source code
compare.clust Man page Source code
dataBased Man page Source code
data_list Man page
ecr Man page Source code
ecr.iterative.1 Man page Source code
ecr.iterative.2 Man page Source code
label.switching Man page Source code
label.switching-package Man page
lamb Man page
permute.mcmc Man page Source code
pra Man page Source code
sjw Man page Source code
stephens Man page Source code

Files

inst
inst/CITATION
NAMESPACE
data
data/fetal-lamb.RData
data/mcmc_output.RData
R
R/relabelling_algorithms.R
MD5
DESCRIPTION
man
man/sjw.Rd
man/pra.Rd
man/data_list.Rd
man/dataBased.Rd
man/label.switching-package.Rd
man/ecr.iterative.2.Rd
man/aic.Rd
man/permute.mcmc.Rd
man/compare.clust.Rd
man/lamb.Rd
man/ecr.Rd
man/stephens.Rd
man/label.switching.Rd
man/ecr.iterative.1.Rd
label.switching documentation built on May 20, 2017, 5:39 a.m.