LC: Lakhesis Calculator

In lakhesis: Consensus Seriation for Binary Data

Lakhesis Calculator

Description

Launch Lakhesis Calculator, a graphical interface to explore binary matrices via correspondence analysis, select potentially well-seriated sequences, and perform consensus seriation. Interface is made with ggplot2, shiny, shinydashboard, and bslib \insertCitewickham_ggplot2:_2016,chang_shiny_2024,chang_shinydashboard_2021,sievert_bslib_2024lakhesis.

Usage

LC()

Details

Input is done in the calculator, via a "long" format a two-column .csv file giving pairs of row and column incidences. See im.csv.read for details. Conversion of a pre-existing incidence matrix to long format can be performed with im.long.

Results can be downloaded from the calculator as an .rds file containing a list of the following:

• results The consensus seriation, PCA, and coefficients of agreement and concentration (lakhesize).

• strands The strands selected by the investigator.

• im.seriated The incidence matrix of the consensus seriation.

Value

Opens the Lakhesis Calculator.

References

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lakhesis documentation built on June 22, 2024, 10:27 a.m.