zeiselPC: Principal components of scRNA-Seq of mouse brain cells

In langevitour: Langevin Tour

Principal components of scRNA-Seq of mouse brain cells

Description

Single-cell RNA-Seq gene expression of 2,816 mouse brain cells (Zeisel, 2015). The top 10 principal components were produced using the steps in the Bioconductor OSCA workflow.

Usage

data(zeiselPC)

Format

A data frame with 2,816 rows representing brain cells and 11 columns:

type

Cell type.

PC1

Principal component score.

PC2

Principal component score.

PC3

Principal component score.

PC4

Principal component score.

PC5

Principal component score.

PC6

Principal component score.

PC7

Principal component score.

PC8

Principal component score.

PC9

Principal component score.

PC10

Principal component score.

References

Zeisel, A., Muñoz-Manchado, A. B., Codeluppi, S., Lönnerberg, P., La Manno, G., Juréus, A., Marques, S., Munguba, H., He, L., Betsholtz, C., Rolny, C., Castelo-Branco, G., Hjerling-Leffler, J., & Linnarsson, S. (2015). Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science, 347(6226), 1138–1142. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1126/science.aaa1934")}

Examples

data(zeiselPC)
langevitour(zeiselPC[,-1], zeiselPC$type)

langevitour documentation built on May 29, 2024, 8:21 a.m.