largeVis: High-Quality Visualizations of Large, High-Dimensional Datasets

Implements the largeVis algorithm (see Tang, et al. (2016) <https://arxiv.org/abs/1602.00370>) for visualizing very large high-dimensional datasets. Also very fast search for approximate nearest neighbors; outlier detection; and optimized implementations of the HDBSCAN*, DBSCAN and OPTICS clustering algorithms; plotting functions for visualizing the above.

AuthorAmos B. Elberg
Date of publication2017-03-08 08:22:24
MaintainerAmos Elberg <amos.elberg@gmail.com>
LicenseGPL-3
Version0.2
https://github.com/elbamos/largeVis

View on CRAN

Functions

as.dendrogram.hdbscan Man page
as.dist.edgematrix Man page
buildEdgeMatrix Man page
buildWijMatrix Man page
buildWijMatrix.CsparseMatrix Man page
buildWijMatrix.edgematrix Man page
buildWijMatrix.TsparseMatrix Man page
distance Man page
distance.CsparseMatrix Man page
distance.matrix Man page
distance.TsparseMatrix Man page
ggManifoldMap Man page
gplot Man page
hdbscan Man page
largeVis Man page
lof Man page
lv_dbscan Man page
lv_optics Man page
manifoldMap Man page
manifoldMapStretch Man page
neighborsToVectors Man page
projectKNNs Man page
randomProjectionTreeSearch Man page
randomProjectionTreeSearch.CsparseMatrix Man page
randomProjectionTreeSearch.matrix Man page
randomProjectionTreeSearch.TsparseMatrix Man page
sgdBatches Man page

Files

largeVis
largeVis/inst
largeVis/inst/vignettedata
largeVis/inst/vignettedata/vignettedata.Rda
largeVis/inst/vignettedata/momentumplot.png
largeVis/inst/vignettedata/spiral.Rda
largeVis/inst/vignettedata/degreeplot.png
largeVis/inst/extdata
largeVis/inst/extdata/benchmark.Rda
largeVis/inst/doc
largeVis/inst/doc/largeVis.Rmd
largeVis/inst/doc/momentumandusedata.R
largeVis/inst/doc/largeVis.html
largeVis/inst/doc/momentumandusedata.html
largeVis/inst/doc/momentumandusedata.Rmd
largeVis/inst/doc/largeVis.R
largeVis/inst/testdata
largeVis/inst/testdata/badedges.Rda
largeVis/inst/testdata/irisdbscan.Rda
largeVis/inst/testdata/truelof10.Rda
largeVis/inst/testdata/opttest.Rda
largeVis/inst/testdata/truelof20.Rda
largeVis/inst/testdata/glassEdges.Rda
largeVis/inst/testdata/badmat.Rda
largeVis/inst/testdata/wijstuff.Rda
largeVis/inst/testdata/irisoptics.Rda
largeVis/inst/testdata/spiral.Rda
largeVis/inst/testdata/zerotest.rda
largeVis/inst/testdata/dim512.Rda
largeVis/tests
largeVis/tests/testthat.R
largeVis/tests/testthat
largeVis/tests/testthat/test-cpp.R
largeVis/tests/testthat/test_g_dbandoptics.R
largeVis/tests/testthat/test_h_hdbscan.R
largeVis/tests/testthat/test_f_specific.R
largeVis/tests/testthat/test_c_sparse.R
largeVis/tests/testthat/test_a_distance.R
largeVis/tests/testthat/test_d_edgematrixwij.R
largeVis/tests/testthat/test_e_vis.R
largeVis/tests/testthat/test_b_neighbors.R
largeVis/src
largeVis/src/Makevars
largeVis/src/neighbors.cpp
largeVis/src/registration.cpp
largeVis/src/hdbscanobj.cpp
largeVis/src/test-runner.cpp
largeVis/src/hdbscan.cpp
largeVis/src/checkfunctions.cpp
largeVis/src/sparse.cpp
largeVis/src/denseneighbors.cpp
largeVis/src/neighbors.h
largeVis/src/testcfunctions.cpp
largeVis/src/hdbscan.h
largeVis/src/distance.h
largeVis/src/minpq.cpp
largeVis/src/gradients.cpp
largeVis/src/distance.cpp
largeVis/src/minindexedpq.h
largeVis/src/edgeweights.cpp
largeVis/src/gradients.h
largeVis/src/minpq.h
largeVis/src/primsalgorithm.h
largeVis/src/alias.h
largeVis/src/hdcluster.cpp
largeVis/src/dbscan.cpp
largeVis/src/optics.cpp
largeVis/src/RcppExports.cpp
largeVis/src/largeVis.h
largeVis/src/largeVis.cpp
largeVis/NAMESPACE
largeVis/NEWS.md
largeVis/R
largeVis/R/dbscan.R largeVis/R/projectKNNs.R largeVis/R/hdbscan.R largeVis/R/buildEdgeMatrix.R
largeVis/R/largeVis-package.r
largeVis/R/RcppExports.R largeVis/R/projectionTreeSearch.R largeVis/R/dendrogram.R largeVis/R/largeVis.R largeVis/R/visualize.R largeVis/R/zzz.R largeVis/R/optics.R largeVis/R/distance.R
largeVis/vignettes
largeVis/vignettes/largevisvignettes.bib
largeVis/vignettes/largeVis.Rmd
largeVis/vignettes/momentumandusedata.Rmd
largeVis/MD5
largeVis/build
largeVis/build/vignette.rds
largeVis/DESCRIPTION
largeVis/man
largeVis/man/lof.Rd largeVis/man/sgdBatches.Rd largeVis/man/gplot.Rd largeVis/man/largeVis-package.Rd largeVis/man/lv_optics.Rd largeVis/man/distance.Rd largeVis/man/manifoldMap.Rd largeVis/man/ggManifoldMap.Rd largeVis/man/neighborsToVectors.Rd largeVis/man/randomProjectionTreeSearch.Rd largeVis/man/buildEdgeMatrix.Rd largeVis/man/buildWijMatrix.Rd largeVis/man/lv_dbscan.Rd largeVis/man/manifoldMapStretch.Rd largeVis/man/as.dendrogram.hdbscan.Rd largeVis/man/largeVis.Rd largeVis/man/hdbscan.Rd largeVis/man/projectKNNs.Rd

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All documentation is copyright its authors; we didn't write any of that.