largeVis: High-Quality Visualizations of Large, High-Dimensional Datasets

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Implements the largeVis algorithm (see Tang, et al. (2016) <https://arxiv.org/abs/1602.00370>) for visualizing very large high-dimensional datasets. Also very fast search for approximate nearest neighbors; outlier detection; and optimized implementations of the HDBSCAN*, DBSCAN and OPTICS clustering algorithms; plotting functions for visualizing the above.

Author
Amos B. Elberg
Date of publication
2016-11-27 02:28:57
Maintainer
Amos Elberg <amos.elberg@gmail.com>
License
GPL-3
Version
0.1.10.2
URLs

View on CRAN

Man pages

as_dendrogram_hdbscan
as_dendrogram_hdbscan
buildEdgeMatrix
Build an nearest-neighbor graph weighted by distance.
buildWijMatrix
buildWijMatrix
distance
Calculate pairwise Euclidean or angular distances efficiently
ggManifoldMap
Visualize an embedding by ggplotting with images
gplot
gplot
hdbscan
hdbscan
largeVis
Apply the LargeVis algorithm for visualizing large...
largeVis-package
largeVis: high-quality visualizations for large,...
lof
Local Outlier Factor Score
lv_dbscan
lv_dbscan
lv_optics
lv_optics
manifoldMap
Visualize an embedding by plotting with images
manifoldMapStretch
manifoldMapStretch
neighborsToVectors
A utility function to convert a k-NN graph to a pair of...
projectKNNs
Project a distance matrix into a lower-dimensional space.
randomProjectionTreeSearch
Find approximate k-Nearest Neighbors using random projection...
sgdBatches
sgdBatches

Files in this package

largeVis
largeVis/inst
largeVis/inst/vignettedata
largeVis/inst/vignettedata/vignettedata.Rda
largeVis/inst/vignettedata/momentumplot.png
largeVis/inst/vignettedata/spiral.Rda
largeVis/inst/vignettedata/degreeplot.png
largeVis/inst/extdata
largeVis/inst/extdata/benchmark.Rda
largeVis/inst/doc
largeVis/inst/doc/largeVis.Rmd
largeVis/inst/doc/momentumandusedata.R
largeVis/inst/doc/largeVis.html
largeVis/inst/doc/momentumandusedata.html
largeVis/inst/doc/momentumandusedata.Rmd
largeVis/inst/doc/largeVis.R
largeVis/inst/testdata
largeVis/inst/testdata/badedges.Rda
largeVis/inst/testdata/irisdbscan.Rda
largeVis/inst/testdata/truelof10.Rda
largeVis/inst/testdata/opttest.Rda
largeVis/inst/testdata/truelof20.Rda
largeVis/inst/testdata/glassEdges.Rda
largeVis/inst/testdata/badmat.Rda
largeVis/inst/testdata/wijstuff.Rda
largeVis/inst/testdata/irisoptics.Rda
largeVis/inst/testdata/spiral.Rda
largeVis/inst/testdata/zerotest.rda
largeVis/inst/testdata/dim512.Rda
largeVis/tests
largeVis/tests/testthat.R
largeVis/tests/testthat
largeVis/tests/testthat/test-cpp.R
largeVis/tests/testthat/test_g_dbandoptics.R
largeVis/tests/testthat/test_h_hdbscan.R
largeVis/tests/testthat/test_f_specific.R
largeVis/tests/testthat/test_c_sparse.R
largeVis/tests/testthat/test_a_distance.R
largeVis/tests/testthat/test_d_edgematrixwij.R
largeVis/tests/testthat/test_e_vis.R
largeVis/tests/testthat/test_b_neighbors.R
largeVis/src
largeVis/src/Makevars
largeVis/src/neighbors.cpp
largeVis/src/pq.h
largeVis/src/test-runner.cpp
largeVis/src/hdbscan.cpp
largeVis/src/checkfunctions.cpp
largeVis/src/sparse.cpp
largeVis/src/denseneighbors.cpp
largeVis/src/neighbors.h
largeVis/src/testcfunctions.cpp
largeVis/src/distance.h
largeVis/src/gradients.cpp
largeVis/src/distance.cpp
largeVis/src/minindexedpq.h
largeVis/src/edgeweights.cpp
largeVis/src/gradients.h
largeVis/src/minpq.h
largeVis/src/alias.h
largeVis/src/dbscan.cpp
largeVis/src/optics.cpp
largeVis/src/RcppExports.cpp
largeVis/src/largeVis.h
largeVis/src/largeVis.cpp
largeVis/NAMESPACE
largeVis/NEWS.md
largeVis/R
largeVis/R/dbscan.R
largeVis/R/projectKNNs.R
largeVis/R/hdbscan.R
largeVis/R/buildEdgeMatrix.R
largeVis/R/largeVis-package.r
largeVis/R/RcppExports.R
largeVis/R/projectionTreeSearch.R
largeVis/R/dendrogram.R
largeVis/R/largeVis.R
largeVis/R/visualize.R
largeVis/R/zzz.R
largeVis/R/optics.R
largeVis/R/distance.R
largeVis/vignettes
largeVis/vignettes/largevisvignettes.bib
largeVis/vignettes/largeVis.Rmd
largeVis/vignettes/momentumandusedata.Rmd
largeVis/MD5
largeVis/build
largeVis/build/vignette.rds
largeVis/DESCRIPTION
largeVis/man
largeVis/man/as_dendrogram_hdbscan.Rd
largeVis/man/lof.Rd
largeVis/man/sgdBatches.Rd
largeVis/man/gplot.Rd
largeVis/man/largeVis-package.Rd
largeVis/man/lv_optics.Rd
largeVis/man/distance.Rd
largeVis/man/manifoldMap.Rd
largeVis/man/ggManifoldMap.Rd
largeVis/man/neighborsToVectors.Rd
largeVis/man/randomProjectionTreeSearch.Rd
largeVis/man/buildEdgeMatrix.Rd
largeVis/man/buildWijMatrix.Rd
largeVis/man/lv_dbscan.Rd
largeVis/man/manifoldMapStretch.Rd
largeVis/man/largeVis.Rd
largeVis/man/hdbscan.Rd
largeVis/man/projectKNNs.Rd