largeVis: High-Quality Visualizations of Large, High-Dimensional Datasets

Implements the largeVis algorithm (see Tang, et al. (2016) <https://arxiv.org/abs/1602.00370>) for visualizing very large high-dimensional datasets. Also very fast search for approximate nearest neighbors; outlier detection; and optimized implementations of the HDBSCAN*, DBSCAN and OPTICS clustering algorithms; plotting functions for visualizing the above.

Install the latest version of this package by entering the following in R:
install.packages("largeVis")
AuthorAmos B. Elberg
Date of publication2017-03-08 08:22:24
MaintainerAmos Elberg <amos.elberg@gmail.com>
LicenseGPL-3
Version0.2
https://github.com/elbamos/largeVis

View on CRAN

Functions

as.dendrogram.hdbscan Man page
as.dist.edgematrix Man page
buildEdgeMatrix Man page
buildWijMatrix Man page
buildWijMatrix.CsparseMatrix Man page
buildWijMatrix.edgematrix Man page
buildWijMatrix.TsparseMatrix Man page
distance Man page
distance.CsparseMatrix Man page
distance.matrix Man page
distance.TsparseMatrix Man page
ggManifoldMap Man page
gplot Man page
hdbscan Man page
largeVis Man page
lof Man page
lv_dbscan Man page
lv_optics Man page
manifoldMap Man page
manifoldMapStretch Man page
neighborsToVectors Man page
projectKNNs Man page
randomProjectionTreeSearch Man page
randomProjectionTreeSearch.CsparseMatrix Man page
randomProjectionTreeSearch.matrix Man page
randomProjectionTreeSearch.TsparseMatrix Man page
sgdBatches Man page

Files

inst
inst/vignettedata
inst/vignettedata/vignettedata.Rda
inst/vignettedata/momentumplot.png
inst/vignettedata/spiral.Rda
inst/vignettedata/degreeplot.png
inst/extdata
inst/extdata/benchmark.Rda
inst/doc
inst/doc/largeVis.Rmd
inst/doc/momentumandusedata.R
inst/doc/largeVis.html
inst/doc/momentumandusedata.html
inst/doc/momentumandusedata.Rmd
inst/doc/largeVis.R
inst/testdata
inst/testdata/badedges.Rda
inst/testdata/irisdbscan.Rda
inst/testdata/truelof10.Rda
inst/testdata/opttest.Rda
inst/testdata/truelof20.Rda
inst/testdata/glassEdges.Rda
inst/testdata/badmat.Rda
inst/testdata/wijstuff.Rda
inst/testdata/irisoptics.Rda
inst/testdata/spiral.Rda
inst/testdata/zerotest.rda
inst/testdata/dim512.Rda
tests
tests/testthat.R
tests/testthat
tests/testthat/test-cpp.R tests/testthat/test_g_dbandoptics.R tests/testthat/test_h_hdbscan.R tests/testthat/test_f_specific.R tests/testthat/test_c_sparse.R tests/testthat/test_a_distance.R tests/testthat/test_d_edgematrixwij.R tests/testthat/test_e_vis.R tests/testthat/test_b_neighbors.R
src
src/Makevars
src/neighbors.cpp
src/registration.cpp
src/hdbscanobj.cpp
src/test-runner.cpp
src/hdbscan.cpp
src/checkfunctions.cpp
src/sparse.cpp
src/denseneighbors.cpp
src/neighbors.h
src/testcfunctions.cpp
src/hdbscan.h
src/distance.h
src/minpq.cpp
src/gradients.cpp
src/distance.cpp
src/minindexedpq.h
src/edgeweights.cpp
src/gradients.h
src/minpq.h
src/primsalgorithm.h
src/alias.h
src/hdcluster.cpp
src/dbscan.cpp
src/optics.cpp
src/RcppExports.cpp
src/largeVis.h
src/largeVis.cpp
NAMESPACE
NEWS.md
R
R/dbscan.R R/projectKNNs.R R/hdbscan.R R/buildEdgeMatrix.R R/largeVis-package.r R/RcppExports.R R/projectionTreeSearch.R R/dendrogram.R R/largeVis.R R/visualize.R R/zzz.R R/optics.R R/distance.R
vignettes
vignettes/largevisvignettes.bib
vignettes/largeVis.Rmd
vignettes/momentumandusedata.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/lof.Rd man/sgdBatches.Rd man/gplot.Rd man/largeVis-package.Rd man/lv_optics.Rd man/distance.Rd man/manifoldMap.Rd man/ggManifoldMap.Rd man/neighborsToVectors.Rd man/randomProjectionTreeSearch.Rd man/buildEdgeMatrix.Rd man/buildWijMatrix.Rd man/lv_dbscan.Rd man/manifoldMapStretch.Rd man/as.dendrogram.hdbscan.Rd man/largeVis.Rd man/hdbscan.Rd man/projectKNNs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.