lcmm: Extended Mixed Models Using Latent Classes and Latent Processes

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Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.

Author
Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Date of publication
2016-03-16 18:16:14
Maintainer
Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
License
GPL (>= 2.0)
Version
1.7.5

View on CRAN

Man pages

cuminc
Predicted cumulative incidence of event according to a...
data_hlme
Simulated dataset for hlme function
data_lcmm
Simulated dataset for lcmm and Jointlcmm functions
Diffepoce
Difference of expected prognostic cross-entropy (EPOCE)...
dynpred
Individual dynamic predictions from a joint latent class...
epoce
Estimators of the Expected Prognostic Observed Cross-Entropy...
estimates
Maximum likelihood estimates
fitY
Marginal predictions of the longitudinal outcome(s) in their...
ForInternalUse
For internal use only ...
gridsearch
Automatic grid search
hlme
Estimation of latent class linear mixed models
Jointlcmm
Estimation of joint latent class models for longitudinal and...
lcmm
Estimation of mixed-effect models and latent class...
lcmm-package
Estimation of extended mixed models using latent classes and...
multlcmm
Estimation of mutlivariate mixed-effect models and...
paquid
Longitudinal data on cognitive and physical aging in the...
plot.cuminc
Plot of predicted cumulative incidences according to a...
plot.dynpred
Plot of individual dynamic predictions
plot.lcmm
Plot of a fitted model
plot.pred.accuracy
Plots
plot.predict
Plot of predicted trajectories and link functions
postprob
Posterior classification stemmed from a 'hlme', 'lcmm',...
predictL
Class-specific marginal predictions in the latent process...
predictlink
Confidence intervals for the estimated link functions from...
predictY
Marginal predictions (possibly class-specific) of a 'hlme',...
print.lcmm
Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm',...
standardMethods
Standard methods for estimated models
summary.lcmm
Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce'...
summarytable
Summary of models
VarCov
Variance-covariance of the estimates
VarCovRE
Estimates, standard errors and Wald test for the parameters...
VarExpl
Percentage of variance explained by the (latent class) linear...
WaldMult
Multivariate Wald Test

Files in this package

lcmm
lcmm/inst
lcmm/inst/CITATION
lcmm/src
lcmm/src/Makevars
lcmm/src/hetmixContMult.f90
lcmm/src/hetmixlin.f90
lcmm/src/AOptim.f90
lcmm/src/calculusTransfo.f90
lcmm/src/postprob2.f90
lcmm/src/Jointhet.f90
lcmm/src/hetmixOrd.f90
lcmm/src/hetmixCont.f90
lcmm/src/cvpl.f90
lcmm/src/predictMult.f90
lcmm/src/predictCont.f90
lcmm/NAMESPACE
lcmm/NEWS
lcmm/data
lcmm/data/paquid.rda
lcmm/data/data_lcmm.rda
lcmm/data/data_hlme.rda
lcmm/R
lcmm/R/risqcum_spl.R
lcmm/R/lcmm.R
lcmm/R/predictY.hlme.R
lcmm/R/mixture.R
lcmm/R/plotresid.R
lcmm/R/gridsearch.R
lcmm/R/plotbaselinerisk.R
lcmm/R/postprob.multlcmm.R
lcmm/R/summary.Jointlcmm.R
lcmm/R/hlme.R
lcmm/R/VarCovRE.lcmm.R
lcmm/R/summary.multlcmm.R
lcmm/R/plot.predictY.R
lcmm/R/VarCov.hlme.R
lcmm/R/multlcmm.R
lcmm/R/VarCov.Jointlcmm.R
lcmm/R/fitY.Jointlcmm.R
lcmm/R/summary.epoce.R
lcmm/R/print.lcmm.R
lcmm/R/standardMethods.R
lcmm/R/plotfit.R
lcmm/R/plot.R
lcmm/R/predictY.multlcmm.R
lcmm/R/predictY.lcmm.R
lcmm/R/dynpred.R
lcmm/R/plot.predictlink.R
lcmm/R/Contlcmm.R
lcmm/R/plot.epoce.R
lcmm/R/plot.dynpred.R
lcmm/R/predictY.Jointlcmm.R
lcmm/R/print.Diffepoce.R
lcmm/R/plotlinkfunction.R
lcmm/R/estimates.Jointlcmm.R
lcmm/R/print.hlme.R
lcmm/R/plot.Diffepoce.R
lcmm/R/print.epoce.R
lcmm/R/estimates.hlme.R
lcmm/R/summary.hlme.R
lcmm/R/predictL.lcmm.R
lcmm/R/estimates.multlcmm.R
lcmm/R/predictlink.lcmm.R
lcmm/R/plotsurvival.R
lcmm/R/fitY.multlcmm.R
lcmm/R/postprob.Jointlcmm.R
lcmm/R/WaldMult.R
lcmm/R/print.multlcmm.R
lcmm/R/risq_spl.R
lcmm/R/Jointlcmm.R
lcmm/R/print.Jointlcmm.R
lcmm/R/plotpostprob.R
lcmm/R/VarCov.multlcmm.R
lcmm/R/fitY.lcmm.R
lcmm/R/VarExpl.multlcmm.R
lcmm/R/predictlink.Jointlcmm.R
lcmm/R/summarytable.R
lcmm/R/factor.names.R
lcmm/R/estimates.lcmm.R
lcmm/R/postprob.lcmm.R
lcmm/R/epoce.R
lcmm/R/summary.Diffepoce.R
lcmm/R/plot.cuminc.R
lcmm/R/predictlink.multlcmm.R
lcmm/R/VarCovRE.multlcmm.R
lcmm/R/VarExpl.hlme.R
lcmm/R/VarExpl.Jointlcmm.R
lcmm/R/VarCov.lcmm.R
lcmm/R/VarExpl.lcmm.R
lcmm/R/summary.lcmm.R
lcmm/R/Ordlcmm.R
lcmm/R/predictL.Jointlcmm.R
lcmm/R/firstlib.R
lcmm/R/Diffepoce.R
lcmm/R/VarCovRE.hlme.R
lcmm/R/plot.predictL.R
lcmm/R/predictL.multlcmm.R
lcmm/R/postprob.hlme.R
lcmm/R/cuminc.R
lcmm/R/plotlinkfunctionmult.R
lcmm/R/VarCovRE.Jointlcmm.R
lcmm/MD5
lcmm/DESCRIPTION
lcmm/THANKS
lcmm/man
lcmm/man/paquid.Rd
lcmm/man/ForInternalUse.Rd
lcmm/man/plot.predict.Rd
lcmm/man/print.lcmm.Rd
lcmm/man/VarExpl.Rd
lcmm/man/plot.lcmm.Rd
lcmm/man/lcmm-package.Rd
lcmm/man/plot.cuminc.Rd
lcmm/man/fitY.Rd
lcmm/man/gridsearch.Rd
lcmm/man/Diffepoce.Rd
lcmm/man/data_lcmm.Rd
lcmm/man/plot.pred.accuracy.Rd
lcmm/man/estimates.Rd
lcmm/man/multlcmm.Rd
lcmm/man/data_hlme.Rd
lcmm/man/VarCov.Rd
lcmm/man/lcmm.Rd
lcmm/man/epoce.Rd
lcmm/man/cuminc.Rd
lcmm/man/standardMethods.Rd
lcmm/man/Jointlcmm.Rd
lcmm/man/postprob.Rd
lcmm/man/dynpred.Rd
lcmm/man/summary.lcmm.Rd
lcmm/man/summarytable.Rd
lcmm/man/plot.dynpred.Rd
lcmm/man/hlme.Rd
lcmm/man/predictY.Rd
lcmm/man/VarCovRE.Rd
lcmm/man/WaldMult.Rd
lcmm/man/predictlink.Rd
lcmm/man/predictL.Rd