API for lddmm
Longitudinal Drift-Diffusion Mixed Models (LDDMM)

Global functions
B_basis Man page Source code
H_ball Man page Source code
LDDMM Man page Source code
P_smooth1 Man page Source code
adapt_scales Source code
add_difference_terms Source code
add_start_terms Source code
build_design Source code
check_caches Source code
coef_entries Source code
compute_WAIC Man page Source code
data Man page
extract_post_draws Man page Source code
extract_post_mean Man page Source code
fixed_level_prior_change Source code
fixed_part Source code
grid_curves Source code
hb_log_target Source code
hb_update_stimulus Source code
init_output Source code
init_state Source code
label_coefs Source code
label_paths Source code
lddmm Man page
lddmm-package Man page
ll_entries Source code
ll_matrix Source code
log_children Source code
log_dnorm Source code
log_likelihood Man page Source code
log_likelihood_ind Man page Source code
log_prior_sd_halfcauchy Source code
log_prior_var_halfcauchy Source code
log_pseudo Source code
log_rdirichlet Source code
logsumexp Source code
mh_positive Source code
moment_estimates Source code
plot_RT Man page Source code
plot_accuracy Man page Source code
plot_post_pars Man page Source code
plot_predictive Man page Source code
random_part Source code
re_index Source code
re_precision Source code
rebuild_likelihood Source code
record_mh Source code
rinvgauss_cpp Source code
rnorm_canonical Source code
run_sampler Source code
sampler_sweep Source code
save_draws Source code
scale_random_effects Source code
set_hypers Source code
shift_offsets Source code
simulate_race Source code
smoothness_stats Source code
subject_deviations Source code
translate Source code
translation_terms_clustered Source code
translation_terms_spline Source code
update_alpha Source code
update_boundary Source code
update_cluster_coefs Source code
update_delta Source code
update_delta_cpp Source code
update_labels Source code
update_random_effects Source code
update_re_cpp Source code
update_re_variances Source code
update_smoothness Source code
update_transition_matrices Source code
update_transitions Source code
validate_data Source code
lddmm documentation built on Oct. 23, 2026, 5:07 p.m.