Nothing
tests/testthat/_snaps/import7500.md
In licoread: Reads Raw Files from Li-COR Gas Analyzers
works with co2fluxtent test files
Code
str(import7500(test_path("co2fluxtent/"), plotinfo = c("date", "location",
"time_of_day", "trial")), digits.d = 4, width = 100, strict.width = "cut")
Output
tibble [345 x 24] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:345] "06172020_almont_night_1a.txt" "06172020_almont_night_1a.txt" "06"..
$ Relative Time : num [1:345] 0.91 1.91 2.91 3.98 4.91 5.92 6.91 7.92 8.91 9.92 ...
$ Temperature : num [1:345] -65.72 -65.72 -65.72 -65.73 -65.72 -66.19 -65.72 -65.72 -65.72 -65..
$ Pressure : num [1:345] 75.67 75.67 75.67 75.67 75.67 75.67 75.67 75.7 75.67 75.67 ...
$ Aux Input : num [1:345] 0 0 0 0 0 0 0 0 0 0 ...
$ CO2 Absorptance: num [1:345] 0.0752 0.0731 0.0737 0.0731 0.073 0.0729 0.0733 0.0733 0.0729 0.07..
$ CO2 mmol/m3 : num [1:345] 14.06 13.89 14.06 13.47 13.51 13.42 13.46 13.47 13.43 13.41 ...
$ CO2 mg/m3 : num [1:345] 618.7 611.3 618.6 592.7 594.6 590.7 592.4 592.5 590.8 590 ...
$ CO2 umol/mol : num [1:345] 320.5 316.6 320.4 307 308 ...
$ H2O Absorptance: num [1:345] 0.0163 0.0163 0.0165 0.0167 0.0166 0.0167 0.0168 0.0169 0.0169 0.0..
$ H2O mmol/m3 : num [1:345] 96 96.1 97.5 97 97.4 97.1 98 98.7 98.7 98.7 ...
$ H2O g/m3 : num [1:345] 1.728 1.731 1.756 1.747 1.754 1.748 1.764 1.777 1.776 1.777 ...
$ H2O mmol/mol : num [1:345] 2.19 2.19 2.22 2.21 2.22 2.21 2.23 2.25 2.25 2.25 ...
$ H2O(°C) : num [1:345] -16.78 -16.76 -16.59 -16.65 -16.61 -16.67 -16.54 -16.45 -16.46 -16..
$ Cooler Voltage : num [1:345] 1.44 1.44 1.44 1.44 1.44 1.44 1.44 1.44 1.44 1.44 ...
$ f_datetime : POSIXct[1:345], format: "2020-06-17 20:22:07" "2020-06-17 20:22:08" "2020-06-"..
$ comment : chr [1:345] NA NA NA NA ...
$ f_start : POSIXct[1:345], format: "2020-06-17 20:22:07" "2020-06-17 20:22:07" "2020-06-"..
$ f_end : POSIXct[1:345], format: "2020-06-17 20:23:06" "2020-06-17 20:23:06" "2020-06-"..
$ pressure_atm : num [1:345] 0.7468 0.7468 0.7468 0.7468 0.7468 ...
$ date : chr [1:345] "06172020" "06172020" "06172020" "06172020" ...
$ location : chr [1:345] "almont" "almont" "almont" "almont" ...
$ time_of_day : chr [1:345] "night" "night" "night" "night" ...
$ trial : chr [1:345] "1a" "1a" "1a" "1a" ...
works with pftc5 test files
Code
str(import7500(test_path("pftc5/"), plotinfo = c("site", "block", "date",
"plot", "trial")), digits.d = 4, width = 100, strict.width = "cut")
Output
tibble [287 x 25] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:287] "ACJ_B_15mar2018_plot1_a.txt" "ACJ_B_15mar2018_plot1_a.txt" "ACJ_"..
$ Relative Time : num [1:287] 0.88 1.94 2.88 3.94 4.86 5.88 6.86 7.88 8.86 9.88 ...
$ Temperature : num [1:287] 20.94 20.92 20.92 20.94 20.94 20.92 20.94 20.94 20.94 20.94 ...
$ Pressure : num [1:287] 67.88 NA 67.86 67.86 67.86 67.86 67.86 67.86 67.89 67.89 ...
$ Aux Input : num [1:287] 0 0 0 0 0 0 0 0 0 0 ...
$ CO2 Absorptance: num [1:287] 0.0638 0.0637 0.0633 0.063 0.063 0.063 0.0632 0.0625 0.063 0.063 ...
$ CO2 mmol/m3 : num [1:287] 11.71 11.69 11.58 11.43 11.47 11.44 11.57 11.43 11.46 11.47 ...
$ CO2 mg/m3 : num [1:287] 515.4 514.6 509.7 503.1 504.8 503.2 509 502.7 504.4 504.6 ...
$ CO2 umol/mol : num [1:287] 421.9 421.3 417.3 412 413.4 ...
$ H2O Absorptance: num [1:287] 0.06 0.0604 0.0605 0.0617 0.0608 0.0613 0.0599 0.0637 0.0617 0.061..
$ H2O mmol/m3 : num [1:287] 491.6 483.3 489.5 514.4 502.2 518.8 478.8 506.5 517.7 510.6 ...
$ H2O g/m3 : num [1:287] 8.848 8.699 8.811 9.26 9.039 9.338 8.619 9.116 9.319 9.19 ...
$ H2O mmol/mol : num [1:287] 17.7 17.41 17.64 18.54 18.09 18.69 17.25 18.25 18.65 18.39 ...
$ H2O(°C) : num [1:287] 9.62 9.37 9.56 10.3 9.94 10.43 9.24 10.07 10.4 10.19 ...
$ Cooler Voltage : num [1:287] 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 ...
$ f_datetime : POSIXct[1:287], format: "2018-03-15 07:39:19" "2018-03-15 07:39:20" "2018-03-"..
$ comment : chr [1:287] "Clear, high PAR, light wind" "Clear, high PAR, light wind" "Clea"..
$ f_start : POSIXct[1:287], format: "2018-03-15 07:39:19" "2018-03-15 07:39:19" "2018-03-"..
$ f_end : POSIXct[1:287], format: "2018-03-15 07:39:48" "2018-03-15 07:39:48" "2018-03-"..
$ pressure_atm : num [1:287] 0.6699 NA 0.6697 0.6697 0.6697 ...
$ site : chr [1:287] "ACJ" "ACJ" "ACJ" "ACJ" ...
$ block : chr [1:287] "B" "B" "B" "B" ...
$ date : chr [1:287] "15mar2018" "15mar2018" "15mar2018" "15mar2018" ...
$ plot : chr [1:287] "plot1" "plot1" "plot1" "plot1" ...
$ trial : chr [1:287] "a" "a" "a" "a" ...
works with pftc7 test files
Code
str(import7500(test_path("pftc7/"), version = "post2023", plotinfo = FALSE),
digits.d = 4, width = 100, strict.width = "cut")
Output
tibble [330 x 42] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:330] "1_2000_east_1_day_a-2023-12-14T105700.txt" "1_2000_ea"..
$ DATAH : chr [1:330] "DATA" "DATA" "DATA" "DATA" ...
$ Time : chr [1:330] "10:57:01" "10:57:02" "10:57:03" "10:57:04" ...
$ Date : Date[1:330], format: "2023-12-14" "2023-12-14" "2023-12-14" ...
$ Sequence Number : num [1:330] 123540 123840 124140 124440 124740 ...
$ CO2 (mmol/m^3) : num [1:330] 13.56 13.28 13.18 13.72 13.42 ...
$ CO2 (mg/m^3) : num [1:330] 596.6 584.3 579.8 603.7 590.3 ...
$ CO2 Absorptance : num [1:330] 0.09824 0.09667 0.0961 0.09913 0.09743 ...
$ CO2 (umol/mol) : num [1:330] 416 407.3 404.2 420.8 411.5 ...
$ H2O (mmol/m^3) : num [1:330] 740.2 732.2 750.1 736.1 742.2 ...
$ H2O (g/m^3) : num [1:330] 13.32 13.18 13.5 13.25 13.36 ...
$ H2O Absorptance : num [1:330] 0.07404 0.07348 0.07473 0.07375 0.07418 ...
$ H2O (mmol/mol) : num [1:330] 22.71 22.46 23.01 22.58 22.76 ...
$ Dew Point (C) : num [1:330] 15.95 15.78 16.15 15.86 15.99 ...
$ Temperature (C) : num [1:330] 22.37 22.36 22.35 22.34 22.34 ...
$ Pressure (kPa) : num [1:330] 80.09 NA 80.09 80.1 80.1 ...
$ Diagnostic Value : num [1:330] 255 255 255 255 255 255 255 255 255 255 ...
$ Diagnostic Value 2 : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ Diagnostic Word : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ DSI Vin (v) : num [1:330] 13.08 13.08 13.08 13.08 13.08 ...
$ Cooler Voltage (v) : num [1:330] 2.023 2.023 2.023 2.023 2.023 ...
$ Chopper Cooler Voltage (v): num [1:330] 2.329 2.328 2.329 2.329 2.328 ...
$ Smart Flux Vin (v) : num [1:330] 13.2 13.2 13.2 13.2 13.2 13.2 13.2 13.2 13.2 13.2 ...
$ CO2 Signal Strength : num [1:330] 99.5 99.5 99.51 99.51 99.5 ...
$ Integral : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ Peak Height : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CO2 Sample : num [1:330] 34486 34630 34645 34504 34617 ...
$ CO2 Reference : num [1:330] 43966 43968 43966 43968 43966 ...
$ H2O Sample : num [1:330] 49056 49036 49030 49085 48993 ...
$ H2O Reference : num [1:330] 52779 52780 52778 52782 52773 ...
$ CH4 Seconds : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 Nano Seconds : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 (umol/mol) : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 (mmol/m^3) : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 Signal Strength (RSSI): num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 Diagnostic Value : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CHK : num [1:330] 10 163 64 252 4 17 96 47 82 44 ...
$ f_datetime : POSIXct[1:330], format: "2023-12-14 10:57:01" "2023-12-14 10:57:02"..
$ comment : chr [1:330] NA NA NA NA ...
$ f_start : POSIXct[1:330], format: "2023-12-14 10:57:01" "2023-12-14 10:57:01"..
$ f_end : POSIXct[1:330], format: "2023-12-14 10:58:48" "2023-12-14 10:58:48"..
$ pressure_atm : num [1:330] 0.7905 NA 0.7905 0.7905 0.7905 ...
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licoread documentation built on Aug. 18, 2025, 5:17 p.m.
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works with co2fluxtent test files
Code
str(import7500(test_path("co2fluxtent/"), plotinfo = c("date", "location",
"time_of_day", "trial")), digits.d = 4, width = 100, strict.width = "cut")
Output
tibble [345 x 24] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:345] "06172020_almont_night_1a.txt" "06172020_almont_night_1a.txt" "06"..
$ Relative Time : num [1:345] 0.91 1.91 2.91 3.98 4.91 5.92 6.91 7.92 8.91 9.92 ...
$ Temperature : num [1:345] -65.72 -65.72 -65.72 -65.73 -65.72 -66.19 -65.72 -65.72 -65.72 -65..
$ Pressure : num [1:345] 75.67 75.67 75.67 75.67 75.67 75.67 75.67 75.7 75.67 75.67 ...
$ Aux Input : num [1:345] 0 0 0 0 0 0 0 0 0 0 ...
$ CO2 Absorptance: num [1:345] 0.0752 0.0731 0.0737 0.0731 0.073 0.0729 0.0733 0.0733 0.0729 0.07..
$ CO2 mmol/m3 : num [1:345] 14.06 13.89 14.06 13.47 13.51 13.42 13.46 13.47 13.43 13.41 ...
$ CO2 mg/m3 : num [1:345] 618.7 611.3 618.6 592.7 594.6 590.7 592.4 592.5 590.8 590 ...
$ CO2 umol/mol : num [1:345] 320.5 316.6 320.4 307 308 ...
$ H2O Absorptance: num [1:345] 0.0163 0.0163 0.0165 0.0167 0.0166 0.0167 0.0168 0.0169 0.0169 0.0..
$ H2O mmol/m3 : num [1:345] 96 96.1 97.5 97 97.4 97.1 98 98.7 98.7 98.7 ...
$ H2O g/m3 : num [1:345] 1.728 1.731 1.756 1.747 1.754 1.748 1.764 1.777 1.776 1.777 ...
$ H2O mmol/mol : num [1:345] 2.19 2.19 2.22 2.21 2.22 2.21 2.23 2.25 2.25 2.25 ...
$ H2O(°C) : num [1:345] -16.78 -16.76 -16.59 -16.65 -16.61 -16.67 -16.54 -16.45 -16.46 -16..
$ Cooler Voltage : num [1:345] 1.44 1.44 1.44 1.44 1.44 1.44 1.44 1.44 1.44 1.44 ...
$ f_datetime : POSIXct[1:345], format: "2020-06-17 20:22:07" "2020-06-17 20:22:08" "2020-06-"..
$ comment : chr [1:345] NA NA NA NA ...
$ f_start : POSIXct[1:345], format: "2020-06-17 20:22:07" "2020-06-17 20:22:07" "2020-06-"..
$ f_end : POSIXct[1:345], format: "2020-06-17 20:23:06" "2020-06-17 20:23:06" "2020-06-"..
$ pressure_atm : num [1:345] 0.7468 0.7468 0.7468 0.7468 0.7468 ...
$ date : chr [1:345] "06172020" "06172020" "06172020" "06172020" ...
$ location : chr [1:345] "almont" "almont" "almont" "almont" ...
$ time_of_day : chr [1:345] "night" "night" "night" "night" ...
$ trial : chr [1:345] "1a" "1a" "1a" "1a" ...
works with pftc5 test files
Code
str(import7500(test_path("pftc5/"), plotinfo = c("site", "block", "date",
"plot", "trial")), digits.d = 4, width = 100, strict.width = "cut")
Output
tibble [287 x 25] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:287] "ACJ_B_15mar2018_plot1_a.txt" "ACJ_B_15mar2018_plot1_a.txt" "ACJ_"..
$ Relative Time : num [1:287] 0.88 1.94 2.88 3.94 4.86 5.88 6.86 7.88 8.86 9.88 ...
$ Temperature : num [1:287] 20.94 20.92 20.92 20.94 20.94 20.92 20.94 20.94 20.94 20.94 ...
$ Pressure : num [1:287] 67.88 NA 67.86 67.86 67.86 67.86 67.86 67.86 67.89 67.89 ...
$ Aux Input : num [1:287] 0 0 0 0 0 0 0 0 0 0 ...
$ CO2 Absorptance: num [1:287] 0.0638 0.0637 0.0633 0.063 0.063 0.063 0.0632 0.0625 0.063 0.063 ...
$ CO2 mmol/m3 : num [1:287] 11.71 11.69 11.58 11.43 11.47 11.44 11.57 11.43 11.46 11.47 ...
$ CO2 mg/m3 : num [1:287] 515.4 514.6 509.7 503.1 504.8 503.2 509 502.7 504.4 504.6 ...
$ CO2 umol/mol : num [1:287] 421.9 421.3 417.3 412 413.4 ...
$ H2O Absorptance: num [1:287] 0.06 0.0604 0.0605 0.0617 0.0608 0.0613 0.0599 0.0637 0.0617 0.061..
$ H2O mmol/m3 : num [1:287] 491.6 483.3 489.5 514.4 502.2 518.8 478.8 506.5 517.7 510.6 ...
$ H2O g/m3 : num [1:287] 8.848 8.699 8.811 9.26 9.039 9.338 8.619 9.116 9.319 9.19 ...
$ H2O mmol/mol : num [1:287] 17.7 17.41 17.64 18.54 18.09 18.69 17.25 18.25 18.65 18.39 ...
$ H2O(°C) : num [1:287] 9.62 9.37 9.56 10.3 9.94 10.43 9.24 10.07 10.4 10.19 ...
$ Cooler Voltage : num [1:287] 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 ...
$ f_datetime : POSIXct[1:287], format: "2018-03-15 07:39:19" "2018-03-15 07:39:20" "2018-03-"..
$ comment : chr [1:287] "Clear, high PAR, light wind" "Clear, high PAR, light wind" "Clea"..
$ f_start : POSIXct[1:287], format: "2018-03-15 07:39:19" "2018-03-15 07:39:19" "2018-03-"..
$ f_end : POSIXct[1:287], format: "2018-03-15 07:39:48" "2018-03-15 07:39:48" "2018-03-"..
$ pressure_atm : num [1:287] 0.6699 NA 0.6697 0.6697 0.6697 ...
$ site : chr [1:287] "ACJ" "ACJ" "ACJ" "ACJ" ...
$ block : chr [1:287] "B" "B" "B" "B" ...
$ date : chr [1:287] "15mar2018" "15mar2018" "15mar2018" "15mar2018" ...
$ plot : chr [1:287] "plot1" "plot1" "plot1" "plot1" ...
$ trial : chr [1:287] "a" "a" "a" "a" ...
works with pftc7 test files
Code
str(import7500(test_path("pftc7/"), version = "post2023", plotinfo = FALSE),
digits.d = 4, width = 100, strict.width = "cut")
Output
tibble [330 x 42] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:330] "1_2000_east_1_day_a-2023-12-14T105700.txt" "1_2000_ea"..
$ DATAH : chr [1:330] "DATA" "DATA" "DATA" "DATA" ...
$ Time : chr [1:330] "10:57:01" "10:57:02" "10:57:03" "10:57:04" ...
$ Date : Date[1:330], format: "2023-12-14" "2023-12-14" "2023-12-14" ...
$ Sequence Number : num [1:330] 123540 123840 124140 124440 124740 ...
$ CO2 (mmol/m^3) : num [1:330] 13.56 13.28 13.18 13.72 13.42 ...
$ CO2 (mg/m^3) : num [1:330] 596.6 584.3 579.8 603.7 590.3 ...
$ CO2 Absorptance : num [1:330] 0.09824 0.09667 0.0961 0.09913 0.09743 ...
$ CO2 (umol/mol) : num [1:330] 416 407.3 404.2 420.8 411.5 ...
$ H2O (mmol/m^3) : num [1:330] 740.2 732.2 750.1 736.1 742.2 ...
$ H2O (g/m^3) : num [1:330] 13.32 13.18 13.5 13.25 13.36 ...
$ H2O Absorptance : num [1:330] 0.07404 0.07348 0.07473 0.07375 0.07418 ...
$ H2O (mmol/mol) : num [1:330] 22.71 22.46 23.01 22.58 22.76 ...
$ Dew Point (C) : num [1:330] 15.95 15.78 16.15 15.86 15.99 ...
$ Temperature (C) : num [1:330] 22.37 22.36 22.35 22.34 22.34 ...
$ Pressure (kPa) : num [1:330] 80.09 NA 80.09 80.1 80.1 ...
$ Diagnostic Value : num [1:330] 255 255 255 255 255 255 255 255 255 255 ...
$ Diagnostic Value 2 : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ Diagnostic Word : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ DSI Vin (v) : num [1:330] 13.08 13.08 13.08 13.08 13.08 ...
$ Cooler Voltage (v) : num [1:330] 2.023 2.023 2.023 2.023 2.023 ...
$ Chopper Cooler Voltage (v): num [1:330] 2.329 2.328 2.329 2.329 2.328 ...
$ Smart Flux Vin (v) : num [1:330] 13.2 13.2 13.2 13.2 13.2 13.2 13.2 13.2 13.2 13.2 ...
$ CO2 Signal Strength : num [1:330] 99.5 99.5 99.51 99.51 99.5 ...
$ Integral : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ Peak Height : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CO2 Sample : num [1:330] 34486 34630 34645 34504 34617 ...
$ CO2 Reference : num [1:330] 43966 43968 43966 43968 43966 ...
$ H2O Sample : num [1:330] 49056 49036 49030 49085 48993 ...
$ H2O Reference : num [1:330] 52779 52780 52778 52782 52773 ...
$ CH4 Seconds : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 Nano Seconds : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 (umol/mol) : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 (mmol/m^3) : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 Signal Strength (RSSI): num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CH4 Diagnostic Value : num [1:330] 0 0 0 0 0 0 0 0 0 0 ...
$ CHK : num [1:330] 10 163 64 252 4 17 96 47 82 44 ...
$ f_datetime : POSIXct[1:330], format: "2023-12-14 10:57:01" "2023-12-14 10:57:02"..
$ comment : chr [1:330] NA NA NA NA ...
$ f_start : POSIXct[1:330], format: "2023-12-14 10:57:01" "2023-12-14 10:57:01"..
$ f_end : POSIXct[1:330], format: "2023-12-14 10:58:48" "2023-12-14 10:58:48"..
$ pressure_atm : num [1:330] 0.7905 NA 0.7905 0.7905 0.7905 ...
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