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tests/testthat/_snaps/licoread_to_fluxible.md
In licoread: Reads Raw Files from Li-COR Gas Analyzers
licoread to fluxible works (snapshot)
Code
str(ch4_dry)
Output
tibble [836 x 149] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:836] "82m-0109-20240725000057" "82m-0109-20240725000057" "82m-0109-20240725000057" "82m-0109-20240725000057" ...
$ f_datetime : POSIXct[1:836], format: "2024-07-25 00:00:58" "2024-07-25 00:00:59" ...
$ f_conc : num [1:836] 3002 3002 3002 3002 3002 ...
$ f_start : POSIXct[1:836], format: "2024-07-25 00:00:58" "2024-07-25 00:00:58" ...
$ f_end : POSIXct[1:836], format: "2024-07-25 00:03:08" "2024-07-25 00:03:08" ...
$ LI-8250_T_CASE : num [1:836] 32.8 32.8 32.8 32.8 32.8 ...
$ LI-8250_PA : num [1:836] 98.1 98.1 98.1 98.1 98.1 ...
$ LI-8250_T_PA : num [1:836] 34.1 34.1 34.1 34.1 34.1 ...
$ LI-8250_PUMP_POSITIVE_PRESSURE : num [1:836] 27 27.1 27 27.2 27.3 ...
$ LI-8250_PUMP_NEGATIVE_PRESSURE : num [1:836] -15 -15 -15 -15 -15 ...
$ LI-8250_FLOW : num [1:836] 2.94 2.94 2.94 2.94 2.94 ...
$ LI-8250_PUMP_TIME : num [1:836] 6312 6312 6312 6312 6312 ...
$ LI-8250_PUMP_SETPOINT : num [1:836] 255 255 255 255 255 255 255 255 255 255 ...
$ LI-8250_PUMP_CURRENT : num [1:836] 0.595 0.593 0.591 0.549 0.569 ...
$ LI-8250_SUB_PRESSURE : num [1:836] 0.0351 0.0455 0.0272 0.0604 0.0525 ...
$ LI-8250_SUB_FLOW : num [1:836] 1.67 1.66 1.65 1.66 1.67 ...
$ LI-8250_VSO_FLOW_SETPOINT : num [1:836] 96 96 96 96 96 96 96 96 96 96 ...
$ LI-8250_VSO_PRESSURE_SETPOINT : num [1:836] 103 103 103 103 103 103 103 103 103 103 ...
$ LI-8250_PORT1_CURRENT : num [1:836] 0.0502 0.1277 0.1956 0.2325 0.139 ...
$ LI-8250_PORT2_CURRENT : num [1:836] 0.0158 0.0156 0.0199 0.016 0.0155 ...
$ LI-8250_PORT3_CURRENT : num [1:836] 0.018 0.0156 0.0142 0.0151 0.0146 ...
$ LI-8250_PORT4_CURRENT : num [1:836] 0.000399 0 0.00012 0.00004 0.000359 0.000199 0.00012 0 0.000199 0.000239 ...
$ LI-8250_PORT5_CURRENT : num [1:836] 0.0165 0.0198 0.0168 0.0162 0.0153 ...
$ LI-8250_PORT6_CURRENT : num [1:836] 0.0155 0.0152 0.0184 0.017 0.0174 ...
$ LI-8250_PORT7_CURRENT : num [1:836] 0.0876 0.0902 0.0879 0.091 0.0927 ...
$ LI-8250_PORT8_CURRENT : num [1:836] 0.002035 0.000519 0.000957 0.000798 0.001596 ...
$ LI-8250_SOL_CURRENT : num [1:836] 0.234 0.234 0.234 0.234 0.234 ...
$ LI-8250_12VDC_CURRENT : num [1:836] 0.00012 0 0.000439 0 0.000239 0.00012 0.00008 0.00012 0.00012 0.00008 ...
$ LI-8250_VIN : num [1:836] 11.7 11.7 11.7 11.7 11.7 ...
$ LI-8250_VOUT : num [1:836] 24.1 24.2 24.2 24.2 24.1 ...
$ LI-8250_VSO_FLOW : num [1:836] 4.46 4.46 4.46 4.47 4.47 ...
$ LI-8250_VSO_PRESSURE : num [1:836] 4.49 4.49 4.49 4.49 4.49 ...
$ LI-8250_5V_VOLTAGE : num [1:836] 5.02 5.02 5.01 5.01 5.02 ...
$ LI-8250_12V_VOLTAGE : num [1:836] 12.1 12.1 12.1 12.1 12.1 ...
$ LI-8250_FLOW_PRESSURE : num [1:836] 4.58 4.6 4.59 4.58 4.6 ...
$ LI-8250_SUB_FLOW_PRESSURE : num [1:836] 1.87 1.84 1.82 1.83 1.87 ...
$ LI-8250_LATITUDE : num [1:836] 40.9 40.9 40.9 40.9 40.9 ...
$ LI-8250_LONGITUDE : num [1:836] -96.7 -96.7 -96.7 -96.7 -96.7 ...
$ LI-8250_SATELLITES : num [1:836] 18 18 18 18 18 18 18 18 18 18 ...
$ LI-8250_ALTITUDE : num [1:836] 351 351 351 351 351 ...
$ LI-7810_DIAGNOSTIC : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ LI-7810_H2O : num [1:836] 22.1 22.1 22.1 22.1 22.1 ...
$ LI-7810_T_CAVITY : num [1:836] 55 55 55 55 55 ...
$ LI-7810_PA_CAVITY : num [1:836] 40.3 40.3 40.3 40.3 40.3 ...
$ LI-7810_PA_LASER_PHASE : num [1:836] 35.7 35.7 35.7 35.7 35.7 ...
$ LI-7810_T_LASER : num [1:836] 40.1 40.1 40.1 40.1 40.1 ...
$ LI-7810_RESIDUAL : num [1:836] 0.00329 0.00328 0.00329 0.00328 0.00328 ...
$ LI-7810_RING_DOWN : num [1:836] 12.7 12.7 12.7 12.7 12.7 ...
$ LI-7810_T_THERMAL_ENCLOSURE : num [1:836] 54.5 54.5 54.5 54.5 54.5 ...
$ LI-7810_PHASE_ERROR : num [1:836] 21.2 -25.5 -20 11.8 5.5 ...
$ LI-7810_T_LASER_SHIFT : num [1:836] 0.384 0.384 0.384 0.384 0.384 ...
$ LI-7810_VIN : num [1:836] 24.2 24.2 24.2 24.2 24.2 ...
$ LI-7820_DIAGNOSTIC : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ LI-7820_H2O : num [1:836] 21.8 21.8 21.8 21.8 21.8 ...
$ LI-7820_T_CAVITY : num [1:836] 55 55 55 55 55 ...
$ LI-7820_PA_CAVITY : num [1:836] 40.1 40.1 40.1 40.1 40.1 ...
$ LI-7820_PA_LASER_PHASE : num [1:836] 47.8 47.8 47.8 47.8 47.8 ...
$ LI-7820_T_LASER : num [1:836] 31.1 31.1 31.1 31.1 31.1 ...
$ LI-7820_RESIDUAL : num [1:836] 0.00213 0.00213 0.00213 0.00213 0.00213 ...
$ LI-7820_RING_DOWN : num [1:836] 41.8 41.8 41.8 41.8 41.8 ...
$ LI-7820_T_THERMAL_ENCLOSURE : num [1:836] 54.5 54.5 54.5 54.5 54.5 ...
$ LI-7820_PHASE_ERROR : num [1:836] -42.1 -28.5 -7.4 11.4 17.3 -32.3 2.1 11 9.9 -23.6 ...
$ LI-7820_T_LASER_SHIFT : num [1:836] -0.139 -0.139 -0.139 -0.139 -0.139 ...
$ LI-7820_VIN : num [1:836] 24.1 24.1 24.1 24.1 24.1 ...
$ CHAMBER_TA : num [1:836] 20.3 20.3 20.3 20.3 20.3 ...
$ CHAMBER_TB : num [1:836] 23.7 23.7 23.7 23.7 23.7 ...
$ CHAMBER_VIN : num [1:836] 24.1 23.9 23.8 23.7 23.8 ...
$ CHAMBER_MOTOR_CURRENT : num [1:836] 0.21 0.38 0.54 0.45 0.27 0.29 0.25 0.3 0.24 0.15 ...
$ CHAMBER_STATE : num [1:836] 1 1 1 1 1 1 1 1 1 1 ...
$ CHAMBER_DIAG : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ CHAMBER_SWC_1 : num [1:836] 0.246 0.246 0.246 0.246 0.246 0.246 0.246 0.246 0.246 0.246 ...
$ CHAMBER_TS_1 : num [1:836] 23.5 23.5 23.5 23.5 23.5 23.5 23.5 23.5 23.5 23.5 ...
$ LI-8250_DATE_TIME : POSIXct[1:836], format: "2024-07-25 00:00:58" "2024-07-25 00:00:59" ...
$ LI-8250_DOY : num [1:836] 207 207 207 207 207 ...
$ LI-7825_DIAG : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ LI-7825_H2O : num [1:836] 21389 21387 21390 21390 21392 ...
$ LI-7825_C12 : num [1:836] 821 824 823 824 832 ...
$ LI-7825_C13 : num [1:836] 9.09 9.13 9.12 9.13 9.22 ...
$ LI-7825_O17 : num [1:836] 0.661 0.662 0.664 0.662 0.668 ...
$ LI-7825_O18 : num [1:836] 3.46 3.47 3.47 3.47 3.5 ...
$ LI-7825_NH3 : num [1:836] -17.2 -17.5 -17 -16.6 -16.9 ...
$ LI-7825_C13_DELTA : num [1:836] -13.8 -13.9 -14 -13.7 -13.5 ...
$ LI-7825_O17_DELTA : num [1:836] 18.5 17.8 20.6 16.3 15.3 ...
$ LI-7825_O18_DELTA : num [1:836] 8.21 8.03 7.98 8.47 8.41 ...
$ LI-7825_PHASE_ERROR : num [1:836] -15.25 43.25 26.25 17.75 -1.75 ...
$ LI-7825_LASER_T_SHIFT : num [1:836] -0.116 -0.116 -0.116 -0.116 -0.116 ...
$ LI-7825_INPUT_VOLTAGE : num [1:836] 24.2 24.2 24.2 24.2 24.2 ...
$ gas : chr [1:836] "LI-7810_CH4_DRY" "LI-7810_CH4_DRY" "LI-7810_CH4_DRY" "LI-7810_CH4_DRY" ...
$ CHAMBER_PPFD : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_T_CASE : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PUMP_TIME : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PUMP_SETPOINT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PUMP_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT1_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT2_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT3_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT4_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT5_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT6_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
[list output truncated]
licoread to fluxible works with 81x
Code
str(co2_df)
Output
tibble [2,681 x 79] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : int [1:2681] 1 1 1 1 1 1 1 1 1 1 ...
$ f_datetime : POSIXct[1:2681], format: "2011-10-28 13:37:49" "2011-10-28 13:37:50" ...
$ f_conc : num [1:2681] 403 403 403 403 403 ...
$ f_start : POSIXct[1:2681], format: "2011-10-28 13:37:49" "2011-10-28 13:37:49" ...
$ f_end : POSIXct[1:2681], format: "2011-10-28 13:39:32" "2011-10-28 13:39:32" ...
$ LI-8100 : chr [1:2681] "1b1\t b2\t 4e80\t 236\t 170" "1b1\t b2\t 4e80\t 236\t 170" "1b1\t b2\t 4e80\t 236\t 170" "1b1\t b2\t 4e80\t 236\t 170" ...
$ File Name : chr [1:2681] "10-28-2011" "10-28-2011" "10-28-2011" "10-28-2011" ...
$ Instrument Name : chr [1:2681] "81A-0107" "81A-0107" "81A-0107" "81A-0107" ...
$ Serial Number : chr [1:2681] "81A-0107" "81A-0107" "81A-0107" "81A-0107" ...
$ Software : chr [1:2681] "4.0.0b" "4.0.0b" "4.0.0b" "4.0.0b" ...
$ Comments : logi [1:2681] NA NA NA NA NA NA ...
$ Obs# : int [1:2681] 1 1 1 1 1 1 1 1 1 1 ...
$ Port# : int [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ Label : chr [1:2681] "survey_with_GPS" "survey_with_GPS" "survey_with_GPS" "survey_with_GPS" ...
$ Observation Length: chr [1:2681] "01:30" "01:30" "01:30" "01:30" ...
$ Pre-purge : chr [1:2681] "00:00" "00:00" "00:00" "00:00" ...
$ Post-purge : chr [1:2681] "00:45" "00:45" "00:45" "00:45" ...
$ IRGA Averaging : int [1:2681] 4 4 4 4 4 4 4 4 4 4 ...
$ Chamber : int [1:2681] 103 103 103 103 103 103 103 103 103 103 ...
$ TSource : chr [1:2681] "Tcham" "Tcham" "Tcham" "Tcham" ...
$ Flow8100 : int [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ Virga : num [1:2681] 19 19 19 19 19 19 19 19 19 19 ...
$ Vext : num [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ Vcham : num [1:2681] 4824 4824 4824 4824 4824 ...
$ Offset : num [1:2681] 5 5 5 5 5 5 5 5 5 5 ...
$ Area : num [1:2681] 318 318 318 318 318 ...
$ Vtotal : num [1:2681] 6432 6432 6432 6432 6432 ...
$ V4 Info : chr [1:2681] "0\tM=0.53\tB=-0.06" "0\tM=0.53\tB=-0.06" "0\tM=0.53\tB=-0.06" "0\tM=0.53\tB=-0.06" ...
$ T4 Info : chr [1:2681] "E" "E" "E" "E" ...
$ Labels_01 : int [1:2681] 28 28 28 28 28 28 28 28 28 28 ...
$ CrvFitStatus : chr [1:2681] "Exp" "Exp" "Exp" "Exp" ...
$ Exp_Flux : num [1:2681] 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 ...
$ Exp_FluxCV : num [1:2681] 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 ...
$ Exp_dCdry/dt : num [1:2681] 0.388 0.388 0.388 0.388 0.388 0.388 0.388 0.388 0.388 0.388 ...
$ Exp_R2 : num [1:2681] 0.996 0.996 0.996 0.996 0.996 ...
$ Exp_SSN : num [1:2681] 0.192 0.192 0.192 0.192 0.192 ...
$ Exp_SE : num [1:2681] 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 ...
$ Exp_a : num [1:2681] 0.00136 0.00136 0.00136 0.00136 0.00136 ...
$ Exp_Co : num [1:2681] 406 406 406 406 406 ...
$ Exp_Cx : num [1:2681] 692 692 692 692 692 ...
$ Exp_t0 : num [1:2681] 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 ...
$ Exp_Iter : int [1:2681] 2 2 2 2 2 2 2 2 2 2 ...
$ Exp_MaxIter : int [1:2681] 10 10 10 10 10 10 10 10 10 10 ...
$ Lin_Flux : num [1:2681] 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 ...
$ Lin_FluxCV : num [1:2681] 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 ...
$ Lin_dCdry/dt : num [1:2681] 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36 ...
$ Lin_R2 : num [1:2681] 0.996 0.996 0.996 0.996 0.996 ...
$ Lin_SSN : num [1:2681] 0.202 0.202 0.202 0.202 0.202 ...
$ Lin_SE : num [1:2681] 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 ...
$ Crv_Domain : int [1:2681] 70 70 70 70 70 70 70 70 70 70 ...
$ Crv_#Smp : int [1:2681] 70 70 70 70 70 70 70 70 70 70 ...
$ Dead Band : chr [1:2681] "00:20" "00:20" "00:20" "00:20" ...
$ TimeClosing : int [1:2681] 14 14 14 14 14 14 14 14 14 14 ...
$ Type : num [1:2681] 1 1 1 1 1 1 1 1 1 1 ...
$ Etime : num [1:2681] -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 ...
$ Tcham : num [1:2681] 20.5 20.5 20.5 20.5 20.5 ...
$ Pressure : num [1:2681] 94.3 94.3 94.3 94.3 94.3 ...
$ H2O : num [1:2681] 6.48 6.44 6.4 6.37 6.38 ...
$ Cdry : num [1:2681] 406 406 406 406 406 ...
$ Tbench : num [1:2681] 51.9 51.9 51.9 51.9 51.9 ...
$ T4 : num [1:2681] 12.1 12.1 12 12 12.1 ...
$ V4 : num [1:2681] 0.233 0.233 0.233 0.233 0.233 0.233 0.233 0.233 0.233 0.233 ...
$ LATITUDE : num [1:2681] 40.9 40.9 40.9 40.9 40.9 ...
$ LONGITUDE : num [1:2681] -96.7 -96.7 -96.7 -96.7 -96.7 ...
$ STATUS : chr [1:2681] "A" "A" "A" "A" ...
$ SPEED : num [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ COURSE : num [1:2681] 263 263 263 263 263 ...
$ RH : num [1:2681] 25.1 25 24.9 24.8 24.8 ...
$ Tboard : num [1:2681] 29.2 29.2 29.2 29.2 29.2 ...
$ Vin : num [1:2681] 12.1 12 12 11.9 11.9 ...
$ CO2ABS : num [1:2681] 0.0737 0.0736 0.074 0.0739 0.0738 ...
$ H2OABS : num [1:2681] 0.0383 0.0393 0.0385 0.0387 0.0382 ...
$ Hour : num [1:2681] 13.6 13.6 13.6 13.6 13.6 ...
$ DOY : num [1:2681] 302 302 302 302 302 ...
$ RAWCO2 : num [1:2681] 1962956 1962669 1962320 1962429 1962550 ...
$ RAWCO2REF : num [1:2681] 1750557 1750233 1750562 1750465 1750504 ...
$ RAWH2O : num [1:2681] 1755598 1753648 1755230 1754881 1755639 ...
$ RAWH2OREF : num [1:2681] 1631318 1631311 1631339 1631330 1631309 ...
$ Annotation : num [1:2681] NA NA NA NA NA NA NA NA NA NA ...
leading zeros issues with 82z
Code
co2_df
Output
# A tibble: 652 x 5
f_fluxid f_datetime f_conc f_end f_start
<chr> <dttm> <dbl> <dttm> <dttm>
1 82m-0102-~ 2021-05-06 00:34:21 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
2 82m-0102-~ 2021-05-06 00:34:22 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
3 82m-0102-~ 2021-05-06 00:34:23 424. 2021-05-06 00:36:30 2021-05-06 00:34:21
4 82m-0102-~ 2021-05-06 00:34:24 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
5 82m-0102-~ 2021-05-06 00:34:25 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
6 82m-0102-~ 2021-05-06 00:34:26 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
7 82m-0102-~ 2021-05-06 00:34:27 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
8 82m-0102-~ 2021-05-06 00:34:28 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
9 82m-0102-~ 2021-05-06 00:34:29 424. 2021-05-06 00:36:30 2021-05-06 00:34:21
10 82m-0102-~ 2021-05-06 00:34:30 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
# i 642 more rows
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licoread to fluxible works (snapshot)
Code
str(ch4_dry)
Output
tibble [836 x 149] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : chr [1:836] "82m-0109-20240725000057" "82m-0109-20240725000057" "82m-0109-20240725000057" "82m-0109-20240725000057" ...
$ f_datetime : POSIXct[1:836], format: "2024-07-25 00:00:58" "2024-07-25 00:00:59" ...
$ f_conc : num [1:836] 3002 3002 3002 3002 3002 ...
$ f_start : POSIXct[1:836], format: "2024-07-25 00:00:58" "2024-07-25 00:00:58" ...
$ f_end : POSIXct[1:836], format: "2024-07-25 00:03:08" "2024-07-25 00:03:08" ...
$ LI-8250_T_CASE : num [1:836] 32.8 32.8 32.8 32.8 32.8 ...
$ LI-8250_PA : num [1:836] 98.1 98.1 98.1 98.1 98.1 ...
$ LI-8250_T_PA : num [1:836] 34.1 34.1 34.1 34.1 34.1 ...
$ LI-8250_PUMP_POSITIVE_PRESSURE : num [1:836] 27 27.1 27 27.2 27.3 ...
$ LI-8250_PUMP_NEGATIVE_PRESSURE : num [1:836] -15 -15 -15 -15 -15 ...
$ LI-8250_FLOW : num [1:836] 2.94 2.94 2.94 2.94 2.94 ...
$ LI-8250_PUMP_TIME : num [1:836] 6312 6312 6312 6312 6312 ...
$ LI-8250_PUMP_SETPOINT : num [1:836] 255 255 255 255 255 255 255 255 255 255 ...
$ LI-8250_PUMP_CURRENT : num [1:836] 0.595 0.593 0.591 0.549 0.569 ...
$ LI-8250_SUB_PRESSURE : num [1:836] 0.0351 0.0455 0.0272 0.0604 0.0525 ...
$ LI-8250_SUB_FLOW : num [1:836] 1.67 1.66 1.65 1.66 1.67 ...
$ LI-8250_VSO_FLOW_SETPOINT : num [1:836] 96 96 96 96 96 96 96 96 96 96 ...
$ LI-8250_VSO_PRESSURE_SETPOINT : num [1:836] 103 103 103 103 103 103 103 103 103 103 ...
$ LI-8250_PORT1_CURRENT : num [1:836] 0.0502 0.1277 0.1956 0.2325 0.139 ...
$ LI-8250_PORT2_CURRENT : num [1:836] 0.0158 0.0156 0.0199 0.016 0.0155 ...
$ LI-8250_PORT3_CURRENT : num [1:836] 0.018 0.0156 0.0142 0.0151 0.0146 ...
$ LI-8250_PORT4_CURRENT : num [1:836] 0.000399 0 0.00012 0.00004 0.000359 0.000199 0.00012 0 0.000199 0.000239 ...
$ LI-8250_PORT5_CURRENT : num [1:836] 0.0165 0.0198 0.0168 0.0162 0.0153 ...
$ LI-8250_PORT6_CURRENT : num [1:836] 0.0155 0.0152 0.0184 0.017 0.0174 ...
$ LI-8250_PORT7_CURRENT : num [1:836] 0.0876 0.0902 0.0879 0.091 0.0927 ...
$ LI-8250_PORT8_CURRENT : num [1:836] 0.002035 0.000519 0.000957 0.000798 0.001596 ...
$ LI-8250_SOL_CURRENT : num [1:836] 0.234 0.234 0.234 0.234 0.234 ...
$ LI-8250_12VDC_CURRENT : num [1:836] 0.00012 0 0.000439 0 0.000239 0.00012 0.00008 0.00012 0.00012 0.00008 ...
$ LI-8250_VIN : num [1:836] 11.7 11.7 11.7 11.7 11.7 ...
$ LI-8250_VOUT : num [1:836] 24.1 24.2 24.2 24.2 24.1 ...
$ LI-8250_VSO_FLOW : num [1:836] 4.46 4.46 4.46 4.47 4.47 ...
$ LI-8250_VSO_PRESSURE : num [1:836] 4.49 4.49 4.49 4.49 4.49 ...
$ LI-8250_5V_VOLTAGE : num [1:836] 5.02 5.02 5.01 5.01 5.02 ...
$ LI-8250_12V_VOLTAGE : num [1:836] 12.1 12.1 12.1 12.1 12.1 ...
$ LI-8250_FLOW_PRESSURE : num [1:836] 4.58 4.6 4.59 4.58 4.6 ...
$ LI-8250_SUB_FLOW_PRESSURE : num [1:836] 1.87 1.84 1.82 1.83 1.87 ...
$ LI-8250_LATITUDE : num [1:836] 40.9 40.9 40.9 40.9 40.9 ...
$ LI-8250_LONGITUDE : num [1:836] -96.7 -96.7 -96.7 -96.7 -96.7 ...
$ LI-8250_SATELLITES : num [1:836] 18 18 18 18 18 18 18 18 18 18 ...
$ LI-8250_ALTITUDE : num [1:836] 351 351 351 351 351 ...
$ LI-7810_DIAGNOSTIC : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ LI-7810_H2O : num [1:836] 22.1 22.1 22.1 22.1 22.1 ...
$ LI-7810_T_CAVITY : num [1:836] 55 55 55 55 55 ...
$ LI-7810_PA_CAVITY : num [1:836] 40.3 40.3 40.3 40.3 40.3 ...
$ LI-7810_PA_LASER_PHASE : num [1:836] 35.7 35.7 35.7 35.7 35.7 ...
$ LI-7810_T_LASER : num [1:836] 40.1 40.1 40.1 40.1 40.1 ...
$ LI-7810_RESIDUAL : num [1:836] 0.00329 0.00328 0.00329 0.00328 0.00328 ...
$ LI-7810_RING_DOWN : num [1:836] 12.7 12.7 12.7 12.7 12.7 ...
$ LI-7810_T_THERMAL_ENCLOSURE : num [1:836] 54.5 54.5 54.5 54.5 54.5 ...
$ LI-7810_PHASE_ERROR : num [1:836] 21.2 -25.5 -20 11.8 5.5 ...
$ LI-7810_T_LASER_SHIFT : num [1:836] 0.384 0.384 0.384 0.384 0.384 ...
$ LI-7810_VIN : num [1:836] 24.2 24.2 24.2 24.2 24.2 ...
$ LI-7820_DIAGNOSTIC : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ LI-7820_H2O : num [1:836] 21.8 21.8 21.8 21.8 21.8 ...
$ LI-7820_T_CAVITY : num [1:836] 55 55 55 55 55 ...
$ LI-7820_PA_CAVITY : num [1:836] 40.1 40.1 40.1 40.1 40.1 ...
$ LI-7820_PA_LASER_PHASE : num [1:836] 47.8 47.8 47.8 47.8 47.8 ...
$ LI-7820_T_LASER : num [1:836] 31.1 31.1 31.1 31.1 31.1 ...
$ LI-7820_RESIDUAL : num [1:836] 0.00213 0.00213 0.00213 0.00213 0.00213 ...
$ LI-7820_RING_DOWN : num [1:836] 41.8 41.8 41.8 41.8 41.8 ...
$ LI-7820_T_THERMAL_ENCLOSURE : num [1:836] 54.5 54.5 54.5 54.5 54.5 ...
$ LI-7820_PHASE_ERROR : num [1:836] -42.1 -28.5 -7.4 11.4 17.3 -32.3 2.1 11 9.9 -23.6 ...
$ LI-7820_T_LASER_SHIFT : num [1:836] -0.139 -0.139 -0.139 -0.139 -0.139 ...
$ LI-7820_VIN : num [1:836] 24.1 24.1 24.1 24.1 24.1 ...
$ CHAMBER_TA : num [1:836] 20.3 20.3 20.3 20.3 20.3 ...
$ CHAMBER_TB : num [1:836] 23.7 23.7 23.7 23.7 23.7 ...
$ CHAMBER_VIN : num [1:836] 24.1 23.9 23.8 23.7 23.8 ...
$ CHAMBER_MOTOR_CURRENT : num [1:836] 0.21 0.38 0.54 0.45 0.27 0.29 0.25 0.3 0.24 0.15 ...
$ CHAMBER_STATE : num [1:836] 1 1 1 1 1 1 1 1 1 1 ...
$ CHAMBER_DIAG : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ CHAMBER_SWC_1 : num [1:836] 0.246 0.246 0.246 0.246 0.246 0.246 0.246 0.246 0.246 0.246 ...
$ CHAMBER_TS_1 : num [1:836] 23.5 23.5 23.5 23.5 23.5 23.5 23.5 23.5 23.5 23.5 ...
$ LI-8250_DATE_TIME : POSIXct[1:836], format: "2024-07-25 00:00:58" "2024-07-25 00:00:59" ...
$ LI-8250_DOY : num [1:836] 207 207 207 207 207 ...
$ LI-7825_DIAG : num [1:836] 0 0 0 0 0 0 0 0 0 0 ...
$ LI-7825_H2O : num [1:836] 21389 21387 21390 21390 21392 ...
$ LI-7825_C12 : num [1:836] 821 824 823 824 832 ...
$ LI-7825_C13 : num [1:836] 9.09 9.13 9.12 9.13 9.22 ...
$ LI-7825_O17 : num [1:836] 0.661 0.662 0.664 0.662 0.668 ...
$ LI-7825_O18 : num [1:836] 3.46 3.47 3.47 3.47 3.5 ...
$ LI-7825_NH3 : num [1:836] -17.2 -17.5 -17 -16.6 -16.9 ...
$ LI-7825_C13_DELTA : num [1:836] -13.8 -13.9 -14 -13.7 -13.5 ...
$ LI-7825_O17_DELTA : num [1:836] 18.5 17.8 20.6 16.3 15.3 ...
$ LI-7825_O18_DELTA : num [1:836] 8.21 8.03 7.98 8.47 8.41 ...
$ LI-7825_PHASE_ERROR : num [1:836] -15.25 43.25 26.25 17.75 -1.75 ...
$ LI-7825_LASER_T_SHIFT : num [1:836] -0.116 -0.116 -0.116 -0.116 -0.116 ...
$ LI-7825_INPUT_VOLTAGE : num [1:836] 24.2 24.2 24.2 24.2 24.2 ...
$ gas : chr [1:836] "LI-7810_CH4_DRY" "LI-7810_CH4_DRY" "LI-7810_CH4_DRY" "LI-7810_CH4_DRY" ...
$ CHAMBER_PPFD : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_T_CASE : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PUMP_TIME : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PUMP_SETPOINT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PUMP_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT1_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT2_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT3_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT4_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT5_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
$ 8250-01_PORT6_CURRENT : num [1:836] NA NA NA NA NA NA NA NA NA NA ...
[list output truncated]
licoread to fluxible works with 81x
Code
str(co2_df)
Output
tibble [2,681 x 79] (S3: tbl_df/tbl/data.frame)
$ f_fluxid : int [1:2681] 1 1 1 1 1 1 1 1 1 1 ...
$ f_datetime : POSIXct[1:2681], format: "2011-10-28 13:37:49" "2011-10-28 13:37:50" ...
$ f_conc : num [1:2681] 403 403 403 403 403 ...
$ f_start : POSIXct[1:2681], format: "2011-10-28 13:37:49" "2011-10-28 13:37:49" ...
$ f_end : POSIXct[1:2681], format: "2011-10-28 13:39:32" "2011-10-28 13:39:32" ...
$ LI-8100 : chr [1:2681] "1b1\t b2\t 4e80\t 236\t 170" "1b1\t b2\t 4e80\t 236\t 170" "1b1\t b2\t 4e80\t 236\t 170" "1b1\t b2\t 4e80\t 236\t 170" ...
$ File Name : chr [1:2681] "10-28-2011" "10-28-2011" "10-28-2011" "10-28-2011" ...
$ Instrument Name : chr [1:2681] "81A-0107" "81A-0107" "81A-0107" "81A-0107" ...
$ Serial Number : chr [1:2681] "81A-0107" "81A-0107" "81A-0107" "81A-0107" ...
$ Software : chr [1:2681] "4.0.0b" "4.0.0b" "4.0.0b" "4.0.0b" ...
$ Comments : logi [1:2681] NA NA NA NA NA NA ...
$ Obs# : int [1:2681] 1 1 1 1 1 1 1 1 1 1 ...
$ Port# : int [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ Label : chr [1:2681] "survey_with_GPS" "survey_with_GPS" "survey_with_GPS" "survey_with_GPS" ...
$ Observation Length: chr [1:2681] "01:30" "01:30" "01:30" "01:30" ...
$ Pre-purge : chr [1:2681] "00:00" "00:00" "00:00" "00:00" ...
$ Post-purge : chr [1:2681] "00:45" "00:45" "00:45" "00:45" ...
$ IRGA Averaging : int [1:2681] 4 4 4 4 4 4 4 4 4 4 ...
$ Chamber : int [1:2681] 103 103 103 103 103 103 103 103 103 103 ...
$ TSource : chr [1:2681] "Tcham" "Tcham" "Tcham" "Tcham" ...
$ Flow8100 : int [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ Virga : num [1:2681] 19 19 19 19 19 19 19 19 19 19 ...
$ Vext : num [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ Vcham : num [1:2681] 4824 4824 4824 4824 4824 ...
$ Offset : num [1:2681] 5 5 5 5 5 5 5 5 5 5 ...
$ Area : num [1:2681] 318 318 318 318 318 ...
$ Vtotal : num [1:2681] 6432 6432 6432 6432 6432 ...
$ V4 Info : chr [1:2681] "0\tM=0.53\tB=-0.06" "0\tM=0.53\tB=-0.06" "0\tM=0.53\tB=-0.06" "0\tM=0.53\tB=-0.06" ...
$ T4 Info : chr [1:2681] "E" "E" "E" "E" ...
$ Labels_01 : int [1:2681] 28 28 28 28 28 28 28 28 28 28 ...
$ CrvFitStatus : chr [1:2681] "Exp" "Exp" "Exp" "Exp" ...
$ Exp_Flux : num [1:2681] 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 ...
$ Exp_FluxCV : num [1:2681] 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 ...
$ Exp_dCdry/dt : num [1:2681] 0.388 0.388 0.388 0.388 0.388 0.388 0.388 0.388 0.388 0.388 ...
$ Exp_R2 : num [1:2681] 0.996 0.996 0.996 0.996 0.996 ...
$ Exp_SSN : num [1:2681] 0.192 0.192 0.192 0.192 0.192 ...
$ Exp_SE : num [1:2681] 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 ...
$ Exp_a : num [1:2681] 0.00136 0.00136 0.00136 0.00136 0.00136 ...
$ Exp_Co : num [1:2681] 406 406 406 406 406 ...
$ Exp_Cx : num [1:2681] 692 692 692 692 692 ...
$ Exp_t0 : num [1:2681] 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 ...
$ Exp_Iter : int [1:2681] 2 2 2 2 2 2 2 2 2 2 ...
$ Exp_MaxIter : int [1:2681] 10 10 10 10 10 10 10 10 10 10 ...
$ Lin_Flux : num [1:2681] 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 ...
$ Lin_FluxCV : num [1:2681] 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.3 ...
$ Lin_dCdry/dt : num [1:2681] 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36 0.36 ...
$ Lin_R2 : num [1:2681] 0.996 0.996 0.996 0.996 0.996 ...
$ Lin_SSN : num [1:2681] 0.202 0.202 0.202 0.202 0.202 ...
$ Lin_SE : num [1:2681] 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 0.003 ...
$ Crv_Domain : int [1:2681] 70 70 70 70 70 70 70 70 70 70 ...
$ Crv_#Smp : int [1:2681] 70 70 70 70 70 70 70 70 70 70 ...
$ Dead Band : chr [1:2681] "00:20" "00:20" "00:20" "00:20" ...
$ TimeClosing : int [1:2681] 14 14 14 14 14 14 14 14 14 14 ...
$ Type : num [1:2681] 1 1 1 1 1 1 1 1 1 1 ...
$ Etime : num [1:2681] -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 ...
$ Tcham : num [1:2681] 20.5 20.5 20.5 20.5 20.5 ...
$ Pressure : num [1:2681] 94.3 94.3 94.3 94.3 94.3 ...
$ H2O : num [1:2681] 6.48 6.44 6.4 6.37 6.38 ...
$ Cdry : num [1:2681] 406 406 406 406 406 ...
$ Tbench : num [1:2681] 51.9 51.9 51.9 51.9 51.9 ...
$ T4 : num [1:2681] 12.1 12.1 12 12 12.1 ...
$ V4 : num [1:2681] 0.233 0.233 0.233 0.233 0.233 0.233 0.233 0.233 0.233 0.233 ...
$ LATITUDE : num [1:2681] 40.9 40.9 40.9 40.9 40.9 ...
$ LONGITUDE : num [1:2681] -96.7 -96.7 -96.7 -96.7 -96.7 ...
$ STATUS : chr [1:2681] "A" "A" "A" "A" ...
$ SPEED : num [1:2681] 0 0 0 0 0 0 0 0 0 0 ...
$ COURSE : num [1:2681] 263 263 263 263 263 ...
$ RH : num [1:2681] 25.1 25 24.9 24.8 24.8 ...
$ Tboard : num [1:2681] 29.2 29.2 29.2 29.2 29.2 ...
$ Vin : num [1:2681] 12.1 12 12 11.9 11.9 ...
$ CO2ABS : num [1:2681] 0.0737 0.0736 0.074 0.0739 0.0738 ...
$ H2OABS : num [1:2681] 0.0383 0.0393 0.0385 0.0387 0.0382 ...
$ Hour : num [1:2681] 13.6 13.6 13.6 13.6 13.6 ...
$ DOY : num [1:2681] 302 302 302 302 302 ...
$ RAWCO2 : num [1:2681] 1962956 1962669 1962320 1962429 1962550 ...
$ RAWCO2REF : num [1:2681] 1750557 1750233 1750562 1750465 1750504 ...
$ RAWH2O : num [1:2681] 1755598 1753648 1755230 1754881 1755639 ...
$ RAWH2OREF : num [1:2681] 1631318 1631311 1631339 1631330 1631309 ...
$ Annotation : num [1:2681] NA NA NA NA NA NA NA NA NA NA ...
leading zeros issues with 82z
Code
co2_df
Output
# A tibble: 652 x 5
f_fluxid f_datetime f_conc f_end f_start
<chr> <dttm> <dbl> <dttm> <dttm>
1 82m-0102-~ 2021-05-06 00:34:21 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
2 82m-0102-~ 2021-05-06 00:34:22 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
3 82m-0102-~ 2021-05-06 00:34:23 424. 2021-05-06 00:36:30 2021-05-06 00:34:21
4 82m-0102-~ 2021-05-06 00:34:24 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
5 82m-0102-~ 2021-05-06 00:34:25 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
6 82m-0102-~ 2021-05-06 00:34:26 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
7 82m-0102-~ 2021-05-06 00:34:27 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
8 82m-0102-~ 2021-05-06 00:34:28 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
9 82m-0102-~ 2021-05-06 00:34:29 424. 2021-05-06 00:36:30 2021-05-06 00:34:21
10 82m-0102-~ 2021-05-06 00:34:30 423. 2021-05-06 00:36:30 2021-05-06 00:34:21
# i 642 more rows
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