Man pages for linf
L-Infinity Normalization and Dominant Community State Types
| agp_gut | American Gut Project gut microbiome dataset |
| asv.to.linf.csts | From counts to filtered, normalized, truncated dCSTs |
| collapse.rare | Switch a dCST hierarchy to the "absorb" view (collapse rare... |
| expand.rare | Switch a dCST hierarchy to the "rare" view (explicit rare... |
| filter.asv | Filter ASV count matrix by library size (samples) and... |
| latex.linf.csts | Render dCSTs as a LaTeX table |
| linf.cells | Dominant-feature assignment |
| linf.csts | Truncated dominant community state types with configurable... |
| linf.dcst.landmark.pipeline | Landmark-aware dCST pipeline |
| linf.feature.labels | Format feature labels for dominant-feature assignments and... |
| linf.hypercube.embedding | Extended homogeneous-coordinate hypercube embedding |
| linf.landmarks | Landmark points for dCST dominance-lineages |
| normalize.linf | L-infinity normalization (row-wise) |
| print.linf.csts | Print method for '"linf.csts"' |
| refine.linf.csts | Refine a dCST hierarchy by one level |
| refine.linf.csts.iter | Iteratively refine dCSTs by one additional level |
| summary.linf.csts | Summarize dCST hierarchy statistics |
| transfer.dcsts | Transfer samples into a frozen dCST hierarchy |
| valencia13k_dcst_depth2_merged | Valencia 13k merged depth-2 dCST assignments |
| valencia13k_dcst_depth3_merged | Valencia 13k merged depth-3 dCST assignments |
| valencia2k | Valencia 2k vaginal microbiome dataset |
| valencia_linf_hypercube_1k | Valencia 1k four-component hypercube embedding example |
