fastFilter: fastFilter: Subroutine for filtering expression matrix

In lmQCM: An Algorithm for Gene Co-Expression Analysis

fastFilter: Subroutine for filtering expression matrix

Description

Author: Zhi Huang

Usage

fastFilter(
  RNA,
  lowest_percentile_mean = 0.2,
  lowest_percentile_variance = 0.2,
  var.func = "var"
)

Arguments

RNA	an expression matrix (rows: genes; columns: samples)
lowest_percentile_mean	a float value range 0-1
lowest_percentile_variance	a float value range 0-1
var.func	specify variance function

Value

An filtered expression matrix

lmQCM documentation built on Oct. 10, 2022, 9:06 a.m.