adjBeta: Adjusting fixed effects for intercept

In lme4breeding: Relationship-Based Mixed-Effects Models

Adjusting fixed effects for intercept

Description

This function is a very simple function to add the intercept to all fixed effects except for the first term.

Usage

adjBeta(x)

Arguments

x	a numeric vector with fixed effects extracted by the fixef function.

Value

$x

a numeric vector with the intercept added to all fixed effects except for the first term which corresponds to the intercept.

Author(s)

Giovanny Covarrubias-Pazaran

References

Giovanny Covarrubias-Pazaran (2024). lme4breeding: enabling genetic evaluation in the age of genomic data. To be submitted to Bioinformatics.

Douglas Bates, Martin Maechler, Ben Bolker, Steve Walker (2015). Fitting Linear Mixed-Effects Models Using lme4. Journal of Statistical Software, 67(1), 1-48.

See Also

The core function of the package lmebreed

Examples

data(DT_example)
DT <- DT_example
A <- A_example

ansMain <- lmebreed(Yield ~ Env + (1|Name),
                    relmat = list(Name = Matrix::chol(A) ),
                    data=DT)

fixef(ansMain)
adjBeta(fixef(ansMain))

lme4breeding documentation built on April 3, 2025, 6:28 p.m.