lmem.gwaser: Linear Mixed Effects Models for Genome-Wide Association Studies

Performs Genome-Wide Association analysis for diverse populations and for multi-environment and multi-trait analysis using linear mixed models.

Author
Lucia Gutierrez [aut], Gaston Quero [aut, cre], Schubert Fernandez [aut], Sofia Brandariz [aut], Sebastian Simondi [ctb]
Date of publication
2016-05-06 23:00:33
Maintainer
Gaston Quero <gastonquero@gmail.com>
License
GPL-3
Version
0.1.0

View on CRAN

Man pages

gwas.analysis
Performs GWAS analysis with five optional models and...
gwas.cross
Read genomic data to perform GWAS analyses.
linkdis.plots
Linkage Disequilibrium heatmap plot
mq.g.diagnostics
Performs molecular markers quality diagnostics.
pca.analysis
Principal Component Analysis.
QA_geno
Name of the file containing genotypic (marker scores)...
QA_map
Name of the file containing marker map information
QA_pheno
Name of the file containing phenotypic information
QA_sim
Name of the file containing phenotypic information

Files in this package

lmem.gwaser
lmem.gwaser/inst
lmem.gwaser/inst/doc
lmem.gwaser/inst/doc/lmem.gwaser.R
lmem.gwaser/inst/doc/lmem.gwaser.Rmd
lmem.gwaser/inst/doc/lmem.gwaser.html
lmem.gwaser/NAMESPACE
lmem.gwaser/data
lmem.gwaser/data/QA_sim.rda
lmem.gwaser/data/QA_map.rda
lmem.gwaser/data/QA_pheno.rda
lmem.gwaser/data/QA_geno.rda
lmem.gwaser/R
lmem.gwaser/R/gwas.cross.R
lmem.gwaser/R/gwas.analysis.R
lmem.gwaser/R/QA_geno.R
lmem.gwaser/R/exploratory_gwas_functions.R
lmem.gwaser/R/QA_pheno.R
lmem.gwaser/R/QA_map.R
lmem.gwaser/R/QA_sim.R
lmem.gwaser/R/mq.g.diagnosis.R
lmem.gwaser/vignettes
lmem.gwaser/vignettes/lmem.gwaser.Rmd
lmem.gwaser/MD5
lmem.gwaser/build
lmem.gwaser/build/vignette.rds
lmem.gwaser/DESCRIPTION
lmem.gwaser/man
lmem.gwaser/man/QA_geno.Rd
lmem.gwaser/man/gwas.analysis.Rd
lmem.gwaser/man/linkdis.plots.Rd
lmem.gwaser/man/QA_pheno.Rd
lmem.gwaser/man/QA_map.Rd
lmem.gwaser/man/QA_sim.Rd
lmem.gwaser/man/gwas.cross.Rd
lmem.gwaser/man/pca.analysis.Rd
lmem.gwaser/man/mq.g.diagnostics.Rd