lmem.gwaser: Linear Mixed Effects Models for Genome-Wide Association Studies
Version 0.1.0

Performs Genome-Wide Association analysis for diverse populations and for multi-environment and multi-trait analysis using linear mixed models.

AuthorLucia Gutierrez [aut], Gaston Quero [aut, cre], Schubert Fernandez [aut], Sofia Brandariz [aut], Sebastian Simondi [ctb]
Date of publication2016-05-06 23:00:33
MaintainerGaston Quero <gastonquero@gmail.com>
LicenseGPL-3
Version0.1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("lmem.gwaser")

Getting started

Mixed-model QTL detection by linkage disequilibrium analysis"

Popular man pages

gwas.analysis: Performs GWAS analysis with five optional models and...
gwas.cross: Read genomic data to perform GWAS analyses.
linkdis.plots: Linkage Disequilibrium heatmap plot
pca.analysis: Principal Component Analysis.
QA_map: Name of the file containing marker map information
QA_pheno: Name of the file containing phenotypic information
QA_sim: Name of the file containing phenotypic information
See all...

All man pages Function index File listing

Man pages

gwas.analysis: Performs GWAS analysis with five optional models and...
gwas.cross: Read genomic data to perform GWAS analyses.
linkdis.plots: Linkage Disequilibrium heatmap plot
mq.g.diagnostics: Performs molecular markers quality diagnostics.
pca.analysis: Principal Component Analysis.
QA_geno: Name of the file containing genotypic (marker scores)...
QA_map: Name of the file containing marker map information
QA_pheno: Name of the file containing phenotypic information
QA_sim: Name of the file containing phenotypic information

Functions

Files

inst
inst/doc
inst/doc/lmem.gwaser.R
inst/doc/lmem.gwaser.Rmd
inst/doc/lmem.gwaser.html
NAMESPACE
data
data/QA_sim.rda
data/QA_map.rda
data/QA_pheno.rda
data/QA_geno.rda
R
R/gwas.cross.R
R/gwas.analysis.R
R/QA_geno.R
R/exploratory_gwas_functions.R
R/QA_pheno.R
R/QA_map.R
R/QA_sim.R
R/mq.g.diagnosis.R
vignettes
vignettes/lmem.gwaser.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/QA_geno.Rd
man/gwas.analysis.Rd
man/linkdis.plots.Rd
man/QA_pheno.Rd
man/QA_map.Rd
man/QA_sim.Rd
man/gwas.cross.Rd
man/pca.analysis.Rd
man/mq.g.diagnostics.Rd
lmem.gwaser documentation built on May 19, 2017, 10:34 a.m.

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