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longreadvqs: Viral Quasispecies Comparison from Long-Read Sequencing Data
Performs variety of viral quasispecies diversity analyses [see Pamornchainavakul et al. (2024) <doi:10.21203/rs.3.rs-4637890/v1>] based on long-read sequence alignment. Main functions include 1) sequencing error and other noise minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
Getting started
Browse package contents
Package details |
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| Author | Nakarin Pamornchainavakul [aut, cre] (<https://orcid.org/0000-0003-0378-0316>) |
| Maintainer | Nakarin Pamornchainavakul <pamornakarin@gmail.com> |
| License | GPL-3 |
| Version | 0.1.3 |
| URL | https://github.com/NakarinP/longreadvqs |
| Package repository | View on CRAN |
| Installation |
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