Man pages for longreadvqs
Viral Quasispecies Comparison from Long-Read Sequencing Data
| AAcompare | Comparing viral quasispecies diversity metrics at amino acid... |
| filtfast | Filtering highly dissimilar reads/sequences out of the... |
| gapremove | Removing gap-rich positions and/or reads/sequences |
| longreadvqs-package | longreadvqs: Viral Quasispecies Comparison from Long-Read... |
| otucompare | Comparing operational taxonomic unit (OTU) by k-means... |
| pctopt | Optimizing cut-off percentage for noise minimization |
| pipe | Pipe operator |
| snvcompare | Plotting single nucleotide variant (SNV) frequency in read... |
| vqsassess | Sequencing error and noise minimization, read down-sampling,... |
| vqscompare | Comparing viral quasispecies profile and operational... |
| vqscustompct | Sequencing error and noise minimization with customized %... |
| vqsout | Exporting viral quasispecies profile comparison results |
| vqsresub | Computing viral quasispecies diversity metrics of... |
| vqssub | Computing viral quasispecies diversity metrics of... |
