lymphclon: Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates

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We provide a clonality score estimator that takes full advantage of the multi-biological-replicate structure of modern sequencing experiments; it specifically takes into account the reality that, typically, the clonal coverage is well below 0.1%.

Author
Yi Liu [aut, cre], Richard A. Olshen [aut], Andrew Z. Fire [ctb], Scott D. Boyd [ctb]
Date of publication
2014-11-11 10:52:02
Maintainer
Yi Liu <liuyipei@gmail.com>
License
LGPL-2
Version
1.3.0

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Man pages

generate.clonal.data
generate.clonal.data (part of lymphclon package)
infer.clonality
infer.clonality (part of lymphclon package)
lymphclon-package
Estimates the clonality score from replicate of abundances...

Files in this package

lymphclon
lymphclon/NAMESPACE
lymphclon/R
lymphclon/R/infer.clonality.R
lymphclon/R/generate.clonal.data.R
lymphclon/MD5
lymphclon/DESCRIPTION
lymphclon/man
lymphclon/man/lymphclon-package.Rd
lymphclon/man/generate.clonal.data.Rd
lymphclon/man/infer.clonality.Rd