Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerably fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.
|Author||Pashupati Mishra, Petri Toronen|
|Date of publication||2014-02-19 12:24:13|
|Maintainer||Pashupati Mishra <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on CRAN|
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