maGUI: A Graphical User Interface for Microarray Data Analysis and Annotation

Provides a Graphical User Interface for Analysing DNA Microarray Data. It performs functional enrichment on genes of interest, identifies gene symbols and also builds co-expression network.

AuthorDhammapal Bharne, Vaibhav Vindal
Date of publication2017-01-11 09:00:15
MaintainerDhammapal Bharne <dhammapalb@uohyd.ac.in>
LicenseGPL-2
Version2.0

View on CRAN

Man pages

affym: Preprocessing and Analysis of Loaded Affymetrix Data

agone: Preprocessing and Analysis of Loaded Agilent_OneColor Data

agtwo: Preprocessing and Analysis of Loaded Agilent_TwoColor Data

clas: Classification of Differentially Expression Genes

clust: Clustering of Normalized Microarray Data

dge: Differntial Gene Expression of Filtered Data

dmo: Preprocessing and Analysis of Loaded Online Data

dmsm: Preprocessing and Analysis of Loaded Series_Matrix Data

filter_sp2: Specific Filtering on Normalized Microarray Data

filter_unsp: UnSpecific Filtering on Normalized Microarray Data

graph_gsea_goBP: Plots Graph of GO Terms for Biological Process of GSEA

graph_gsea_goCC: Plots Graph of GO Terms for Cellular Component of GSEA

graph_gsea_goMF: Plots Graph of GO Terms for Molecular Function of GSEA

graph_gsea_kegg: Plots Graph of Pathways for a KEGG ID from GSEA

graph_gsta_goBP: Plots Graph of GO Terms for Biological Process of GSTA

graph_gsta_goCC: Plots Graph of GO Terms for Cellular Component of GSTA

graph_gsta_goMF: Plots Graph of GO Terms for Molecular Function of GSTA

graph_gsta_kegg: Plots Graph of Pathways for a KEGG ID from GSTA

gsea_goBP: Gene Set Enrichment Analysis for Biological Process

gsea_goCC: Gene Set Enrichment Analysis for Cellular Component

gsea_goMF: Gene Set Enrichment Analysis for Molecular Function

gsea_kegg: Gene Set Enrichment Analysis for KEGG Pathways

gsta_goBP: Gene Set Test Analysis for Biological Process

gsta_goCC: Gene Set Test Analysis for Cellular Component

gsta_goMF: Gene Set Test Analysis for Molecular Function

gsta_kegg: Gene Set Test Analysis for KEGG Pathways

illbead: Preprocessing and Analysis of Loaded Illumina_Beadarray Data

illlumi: Preprocessing and Analysis of Loaded Illumina_Lumi Data

maGUI: A Graphical User Interface for Microarray Data Analysis and...

maGUI-package: A Graphical User Interface for Microarray Data Analysis and...

nimblg: Preprocessing and Analysis of Loaded Nimblegen Data

ntwk: Co-regulated Network for Differentially Expressed Genes

pca: Pricipal Component Analysis on Normalized Microarray Data

ppis: Protein-Protein Interactions Prediction from Microarray Data

sse: Sample Size Estimation on Normalized Microarray Data

stat_sign: Statisitical Significance of Filtering Data

symbol: Mapping of Identifiers of Microarray Data to Genes

Files in this package

maGUI
maGUI/NAMESPACE
maGUI/R
maGUI/R/gsea_goBP.R maGUI/R/graph_gsea_goMF.R maGUI/R/graph_gsta_goMF.R maGUI/R/dendro.R maGUI/R/graph_gsta_goBP.R maGUI/R/pca.R maGUI/R/filter_sp2.R maGUI/R/affym.R maGUI/R/dmo.R maGUI/R/choosefile.R maGUI/R/graph_gsea_goCC.R maGUI/R/gsea_goMF.R maGUI/R/illlumi.R maGUI/R/dmsm.R maGUI/R/illbead.R maGUI/R/dge.R maGUI/R/graph_gsta_kegg.R maGUI/R/gsta_goBP.R maGUI/R/graph_gsea_goBP.R maGUI/R/choosefolder.R maGUI/R/ntwk.R maGUI/R/symbol.R maGUI/R/cluster.R maGUI/R/graph_gsta_goCC.R maGUI/R/filter_sp.R maGUI/R/gsta_goMF.R maGUI/R/nimblg.R maGUI/R/gsta_kegg.R maGUI/R/agone.R maGUI/R/graph_gsea_kegg.R maGUI/R/gsea_kegg.R maGUI/R/agtwo.R maGUI/R/maGUI.R maGUI/R/filter_unsp.R maGUI/R/gsea_goCC.R maGUI/R/stat_sign.R maGUI/R/class.R maGUI/R/ppis.R maGUI/R/gsta_goCC.R maGUI/R/sse.R
maGUI/MD5
maGUI/DESCRIPTION
maGUI/man
maGUI/man/symbol.Rd maGUI/man/gsta_kegg.Rd maGUI/man/gsea_goBP.Rd maGUI/man/graph_gsea_kegg.Rd maGUI/man/gsta_goMF.Rd maGUI/man/graph_gsta_goBP.Rd maGUI/man/maGUI-package.Rd maGUI/man/graph_gsea_goCC.Rd maGUI/man/affym.Rd maGUI/man/graph_gsea_goBP.Rd maGUI/man/dmo.Rd maGUI/man/maGUI.Rd maGUI/man/ntwk.Rd maGUI/man/graph_gsta_goMF.Rd maGUI/man/nimblg.Rd maGUI/man/graph_gsta_kegg.Rd maGUI/man/dge.Rd maGUI/man/filter_unsp.Rd maGUI/man/gsea_kegg.Rd maGUI/man/sse.Rd maGUI/man/stat_sign.Rd maGUI/man/gsea_goCC.Rd maGUI/man/ppis.Rd maGUI/man/pca.Rd maGUI/man/graph_gsea_goMF.Rd maGUI/man/dmsm.Rd maGUI/man/filter_sp2.Rd maGUI/man/gsta_goCC.Rd maGUI/man/agone.Rd maGUI/man/illlumi.Rd maGUI/man/gsta_goBP.Rd maGUI/man/illbead.Rd maGUI/man/clas.Rd maGUI/man/agtwo.Rd maGUI/man/graph_gsta_goCC.Rd maGUI/man/gsea_goMF.Rd maGUI/man/clust.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.