maGUI: A Graphical User Interface for Microarray Data Analysis and Annotation

Provides a Graphical User Interface for Analysing DNA Microarray Data. It performs functional enrichment on genes of interest, identifies gene symbols and also builds co-expression network.

Install the latest version of this package by entering the following in R:
install.packages("maGUI")
AuthorDhammapal Bharne, Vaibhav Vindal
Date of publication2017-03-04 17:12:29
MaintainerDhammapal Bharne <dhammapalb@uohyd.ac.in>
LicenseGPL-2
Version2.2

View on CRAN

Man pages

affym: Preprocessing and Analysis of Loaded Affymetrix Data

agone: Preprocessing and Analysis of Loaded Agilent_OneColor Data

agtwo: Preprocessing and Analysis of Loaded Agilent_TwoColor Data

clas: Classification of Differentially Expression Genes

clust: Clustering of Normalized Microarray Data

dge: Differntial Gene Expression of Filtered Data

dmo: Preprocessing and Analysis of Loaded Online Data

dmsm: Preprocessing and Analysis of Loaded Series_Matrix Data

filter_sp2: Specific Filtering on Normalized Microarray Data

filter_unsp: UnSpecific Filtering on Normalized Microarray Data

graph_gsea_goBP: Plots Graph of GO Terms for Biological Process of GSEA

graph_gsea_goCC: Plots Graph of GO Terms for Cellular Component of GSEA

graph_gsea_goMF: Plots Graph of GO Terms for Molecular Function of GSEA

graph_gsea_kegg: Plots Graph of Pathways for a KEGG ID from GSEA

graph_gsta_goBP: Plots Graph of GO Terms for Biological Process of GSTA

graph_gsta_goCC: Plots Graph of GO Terms for Cellular Component of GSTA

graph_gsta_goMF: Plots Graph of GO Terms for Molecular Function of GSTA

graph_gsta_kegg: Plots Graph of Pathways for a KEGG ID from GSTA

gsea_goBP: Gene Set Enrichment Analysis for Biological Process

gsea_goCC: Gene Set Enrichment Analysis for Cellular Component

gsea_goMF: Gene Set Enrichment Analysis for Molecular Function

gsea_kegg: Gene Set Enrichment Analysis for KEGG Pathways

gsta_goBP: Gene Set Test Analysis for Biological Process

gsta_goCC: Gene Set Test Analysis for Cellular Component

gsta_goMF: Gene Set Test Analysis for Molecular Function

gsta_kegg: Gene Set Test Analysis for KEGG Pathways

illbead: Preprocessing and Analysis of Loaded Illumina_Beadarray Data

illlumi: Preprocessing and Analysis of Loaded Illumina_Lumi Data

maGUI: A Graphical User Interface for Microarray Data Analysis and...

maGUI-package: A Graphical User Interface for Microarray Data Analysis and...

nimblg: Preprocessing and Analysis of Loaded Nimblegen Data

ntwk: Co-regulated Network for Differentially Expressed Genes

pca: Pricipal Component Analysis on Normalized Microarray Data

ppis: Protein-Protein Interactions Prediction from Microarray Data

sse: Sample Size Estimation on Normalized Microarray Data

stat_sign: Statisitical Significance of Filtering Data

symbol: Mapping of Identifiers of Microarray Data to Genes

Functions

affym Man page
agone Man page
agtwo Man page
clas Man page
clust Man page
dge Man page
dmo Man page
dmsm Man page
filter_sp2 Man page
filter_unsp Man page
graph_gsea_goBP Man page
graph_gsea_goCC Man page
graph_gsea_goMF Man page
graph_gsea_kegg Man page
graph_gsta_goBP Man page
graph_gsta_goCC Man page
graph_gsta_goMF Man page
graph_gsta_kegg Man page
gsea_goBP Man page
gsea_goCC Man page
gsea_goMF Man page
gsea_kegg Man page
gsta_goBP Man page
gsta_goCC Man page
gsta_goMF Man page
gsta_kegg Man page
illbead Man page
illlumi Man page
maGUI Man page
maGUI-package Man page
nimblg Man page
ntwk Man page
pca Man page
ppis Man page
sse Man page
stat_sign Man page
symbol Man page
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Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.