pairmod: Find best performing pairs
In malani: Machine Learning Assisted Network Inference
Description
Usage
Arguments
Value
Description
Combine each gene in initial set with all genes in the original set. Top npair pairs are selected to construct the Q matrix.
Usage
1
pairmod(X, LX, theta, npair = 10)
Arguments
X
Original gene expression data matrix. With G rows (number of genes) and S column (number of samples).
LX
Class labels.
theta
Initial gene set.
npair
Given a gene in initial set, top npair best performing pairs correspond to that gene are selected (Default is 10).
Value
Best (npair*G/20) performing pairs.
malani documentation built on May 2, 2019, 12:21 p.m.
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Description Usage Arguments Value
Description
Combine each gene in initial set with all genes in the original set. Top npair pairs are selected to construct the Q matrix.
Usage
1 | pairmod(X, LX, theta, npair = 10)
|
Arguments
X |
Original gene expression data matrix. With G rows (number of genes) and S column (number of samples). |
LX |
Class labels. |
theta |
Initial gene set. |
npair |
Given a gene in initial set, top |
Value
Best (npair*G/20) performing pairs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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