manhattanly: Interactive Q-Q and Manhattan Plots Using 'plotly.js'

Create interactive Q-Q, manhattan and volcano plots that are usable from the R console, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package by Stephen Turner and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.

AuthorSahir Bhatnagar [aut, cre] (http://sahirbhatnagar.com/)
Date of publication2016-11-16 01:56:53
MaintainerSahir Bhatnagar <sahir.bhatnagar@gmail.com>
LicenseMIT + file LICENSE
Version0.2.0
https://github.com/sahirbhatnagar/manhattanly/, http://sahirbhatnagar.com/manhattanly/

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Files in this package

manhattanly
manhattanly/inst
manhattanly/inst/doc
manhattanly/inst/doc/manhattanly.R
manhattanly/inst/doc/manhattanly.Rmd
manhattanly/inst/doc/manhattanly.html
manhattanly/NAMESPACE
manhattanly/NEWS.md
manhattanly/data
manhattanly/data/HapMap.rda
manhattanly/data/significantSNP.rda
manhattanly/R
manhattanly/R/manhattanly.R manhattanly/R/volcanor.R manhattanly/R/volcanoly.R manhattanly/R/manhattanr.R manhattanly/R/significantSNP-data.R manhattanly/R/qqly.R manhattanly/R/qqr.R manhattanly/R/zzz.R manhattanly/R/HapMap-data.R
manhattanly/vignettes
manhattanly/vignettes/manhattanly.Rmd
manhattanly/README.md
manhattanly/MD5
manhattanly/build
manhattanly/build/vignette.rds
manhattanly/DESCRIPTION
manhattanly/man
manhattanly/man/volcanor.Rd manhattanly/man/manhattanr.Rd manhattanly/man/HapMap.Rd manhattanly/man/qqly.Rd manhattanly/man/significantSNP.Rd manhattanly/man/volcanoly.Rd manhattanly/man/manhattanly.Rd manhattanly/man/qqr.Rd
manhattanly/LICENSE

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