manhattanly: Interactive Q-Q and Manhattan Plots Using 'plotly.js'

Create interactive Q-Q, manhattan and volcano plots that are usable from the R console, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package by Stephen Turner and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.

Install the latest version of this package by entering the following in R:
install.packages("manhattanly")
AuthorSahir Bhatnagar [aut, cre] (http://sahirbhatnagar.com/)
Date of publication2016-11-16 01:56:53
MaintainerSahir Bhatnagar <sahir.bhatnagar@gmail.com>
LicenseMIT + file LICENSE
Version0.2.0
https://github.com/sahirbhatnagar/manhattanly/, http://sahirbhatnagar.com/manhattanly/

View on CRAN

Files

inst
inst/doc
inst/doc/manhattanly.R
inst/doc/manhattanly.Rmd
inst/doc/manhattanly.html
NAMESPACE
NEWS.md
data
data/HapMap.rda
data/significantSNP.rda
R
R/manhattanly.R R/volcanor.R R/volcanoly.R R/manhattanr.R R/significantSNP-data.R R/qqly.R R/qqr.R R/zzz.R R/HapMap-data.R
vignettes
vignettes/manhattanly.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/volcanor.Rd man/manhattanr.Rd man/HapMap.Rd man/qqly.Rd man/significantSNP.Rd man/volcanoly.Rd man/manhattanly.Rd man/qqr.Rd
LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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