Man pages for mapfuser
Construct Consensus Genetic Maps and Estimate Recombination Rates
| calc_RMSE | Internal function to calculate the Root Mean Square Error to... |
| check_anchors | Replace sub-linkage groups (e.g. 1.1, 1.2) with truncated... |
| check_cM | internal position check |
| genphys_fit | Model the relationship between genetical and physical genome... |
| LPmerge_par | Wrapper for multicore and multichromosome merging of maps... |
| map_cohesion | Graph check whether maps can be integrated |
| map_export | Convert a consensus genetic map created with mapfuser to... |
| map_flip | Invert a linkage group |
| map_orient | Corrects orientation of input genetic maps |
| map_qc | Wrapper function of genetic map cleaning per linkage group. |
| map_split | Replace sub-linkage groups (e.g. 1.1, 1.2) with truncated... |
| plot.mapfuser | Visualise mapfuser object data |
| predict.mapfuser | Predict centiMorgan positions from fitted gam models on the... |
| read_joinmap | Internal function, read genetic maps in JoinMap format |
| read_maps | Read genetic maps |
| read_ref | Load a reference map |
| remove_manual | Manually remove a linkage group within a specific map and... |
| select_result | Select result from mapfuser |
| summary.mapfuser | internal position check |
