add_pie_charts: Create Pie Charts

In mapmixture: Spatial Visualisation of Admixture on a Projected Map

Create Pie Charts

Description

Internal function used to add pie charts to a ggplot object.

Usage

add_pie_charts(
  df,
  admix_columns,
  lat_column,
  lon_column,
  pie_colours,
  border = 0.3,
  border_col = "black",
  opacity = 1,
  pie_size = 1
)

Arguments

df	data.frame (see examples).
admix_columns	the columns of the data.frame containing admixture data.
lat_column	string or integer representing the latitude column.
lon_column	string or integer representing the longitude column.
pie_colours	vector of colours the same length as the number of clusters.
border	numeric value of zero or greater.
border_col	string denoting colour of pie border.
opacity	numeric value of zero to one.
pie_size	vector of numeric values of zero or greater. Can be a single value or a vector the same length as the number of sites.

Value

A list of annotation_custom() objects.

Examples

df <- data.frame(
  site = c("London", "Paris", "Berlin", "Rome", "Madrid"),
  lat = c(51.51, 48.85, 52.52, 41.90, 40.42),
  lon = c(-0.12, 2.35, 13.40, 12.49, -3.70),
  Cluster1 = c(0.95, 0.5, 0.1, 0, 0),
  Cluster2 = c(0.05, 0.45, 0.45, 0.01, 0.75),
  Cluster3 = c(0, 0.05, 0.45, 0.99, 0.25)
)

df <- data.frame(
  site = c("London", "Paris", "Berlin", "Rome", "Madrid"),
  lat = c(6712008, 6249448, 6894700, 5146012, 4927165),
  lon = c(-13358.34, 261600.80, 1491681.18, 1390380.44, -411882.12),
  Cluster1 = c(0.95, 0.5, 0.1, 0, 0),
  Cluster2 = c(0.05, 0.45, 0.45, 0.01, 0.75),
  Cluster3 = c(0, 0.05, 0.45, 0.99, 0.25)
)

add_pie_charts(df,
  admix_columns = 4:ncol(df),
  lat_column = "lat",
  lon_column = "lon",
  pie_colours = c("blue","purple","green"),
  border = 0.3,
  opacity = 1,
  pie_size = 1
)

mapmixture documentation built on April 3, 2025, 7:45 p.m.