march: Markov Chains

Computation of various Markovian models for categorical data including homogeneous Markov chains of any order, MTD models, Hidden Markov models, and Double Chain Markov Models.

Author
Ogier Maitre, with contributions from Andre Berchtold and Oliver Buschor
Date of publication
2016-05-12 14:47:36
Maintainer
Andre Berchtold <andre.berchtold@unil.ch>
License
GPL-2
Version
1.4

View on CRAN

Man pages

march
Computation of Markovian models for categorical data
march.AIC
Compute Akaike Information Criterion (AIC). The AIC (Akaike...
march.BIC
Compute Bayesian Information Criterion (BIC).
march.Dataset-class
Dataset for march package.
march.dataset.h.extractSequence
Extract a sequence from a dataset.
march.dataset.loadFromDataFrame
Construct a dataset from a data.frame or a matrix.
march.dataset.loadFromFile
Load a dataset from a file.
march.Dcmm-class
A Double Chain Markov Model (DCMM).
march.dcmm.construct
Construct a double chain Markov model (DCMM).
march.dcmm.viterbi
Viterbi algorithm for a DCMM model.
march.Indep-class
An independence model.
march.indep.construct
Construct an independence model (zero-order Markov chain).
march.Mc-class
A Markov chain of order >= 1.
march.mc.construct
Construct an homogeneous Markov Chain.
march.Model-class
A basic and virtual march model.
march.Mtd-class
A Mixture Transition Distribution (MTD) model.
march.mtd.construct
Construct a Mixture Transition Distribution (MTD) model.
march.name
march.Model name.
march.name-march.Dcmm-method
This method is called with the object "march.Dcmm" and...
march.name-march.Indep-method
This method is called with the object "march.Indep" and...
march.name-march.Mc-method
This method is called with the object "march.MC" and provides...
march.name-march.Mtd-method
This method is called with the object "march.Mtd" and...
march.read
Load a march.Model.
march.summary
march.Model Summary.
march.thompson
Thompson Confidence Intervals for a march.Model.
march.thompson-march.Dcmm-numeric-method
This method is called with the object "march.Dcmm" and the...
march.thompson-march.Indep-numeric-method
This method is called with the object "march.Indep" and the...
march.thompson-march.Mc-numeric-method
This method is called with the object "march.Mc" and the...
march.thompson-march.Mtd-numeric-method
This method is called with the object "march.Mtd" and the...
march.write
Save a march.Model
pewee
Song of the Wood Pewee (march dataset format)
pewee_df
Song of the Wood Pewee (data frame format)
pewee_t
Song of the Wood Pewee (text format)
sleep
Sleep disorders (march dataset format)
sleep_df
Sleep disorders (data frame format)

Files in this package

march
march/tests
march/tests/examples
march/tests/examples/march.dataset.loadFromDataFrame.example.R
march/tests/examples/march.dcmm.viterbi.example.R
march/tests/examples/march.BIC.example.R
march/tests/examples/march.mtd.construct.example.R
march/tests/examples/march.dcmm.construct.example.R
march/tests/examples/march.mc.construct.example.R
march/tests/examples/march.indep.construct.example.R
march/tests/examples/march.AIC.example.R
march/tests/examples/march.thompson.example.R
march/tests/examples/march.name.example.R
march/NAMESPACE
march/data
march/data/pewee_t.txt.bz2
march/data/sleep.rda
march/data/pewee_df.rda
march/data/sleep_df.rda
march/data/pewee.rda
march/R
march/R/march.AllClasses.R
march/R/march.dcmm.R
march/R/march.ci.R
march/R/march.mc.R
march/R/march.ea.R
march/R/march.tools.R
march/R/march.model.R
march/R/march.dataset.R
march/R/march.mtd.R
march/R/march.dcmm.ea.R
march/R/march.diagnostic.R
march/R/march.AllGenerics.R
march/R/march.indep.R
march/MD5
march/README
march/DESCRIPTION
march/man
march/man/march.dataset.loadFromFile.Rd
march/man/march.dataset.h.extractSequence.Rd
march/man/march.AIC.Rd
march/man/march.name-march.Indep-method.Rd
march/man/march.dataset.loadFromDataFrame.Rd
march/man/march.Dataset-class.Rd
march/man/march.name.Rd
march/man/pewee.Rd
march/man/march.name-march.Mc-method.Rd
march/man/march.summary.Rd
march/man/march.Mc-class.Rd
march/man/march.Model-class.Rd
march/man/march.Mtd-class.Rd
march/man/march.mtd.construct.Rd
march/man/march.name-march.Dcmm-method.Rd
march/man/march.read.Rd
march/man/march.thompson.Rd
march/man/march.dcmm.viterbi.Rd
march/man/march.indep.construct.Rd
march/man/pewee_t.Rd
march/man/march.thompson-march.Mc-numeric-method.Rd
march/man/march.thompson-march.Indep-numeric-method.Rd
march/man/march.thompson-march.Mtd-numeric-method.Rd
march/man/march.dcmm.construct.Rd
march/man/march.Rd
march/man/march.Dcmm-class.Rd
march/man/pewee_df.Rd
march/man/march.name-march.Mtd-method.Rd
march/man/sleep.Rd
march/man/march.thompson-march.Dcmm-numeric-method.Rd
march/man/march.Indep-class.Rd
march/man/march.write.Rd
march/man/sleep_df.Rd
march/man/march.mc.construct.Rd
march/man/march.BIC.Rd