soy: Soybean dataset

In mas: Marker Association Studies

Soybean dataset

Description

Toy dataset part of the SoyNAM. Plant height observed in a few soybean families in multiple environements.

Details

Subset of the data presented in Xavier et al. (2017). The whole dataset is available in the R package NAM, through data(met). Details of the soybean nested association mappging (SoyNAM) population are provided by Song et al. (2017), Xavier et al. (2018) and Diers et al. (2018).

References

Xavier, A., Hall, B., Hearst, A.A., Cherkauer, K.A. and Rainey, K.M., 2017. Genetic architecture of phenomic-enabled canopy coverage in Glycine max. Genetics, 206(2), pp.1081-1089.

Xavier, A., Xu, S., Muir, W.M. and Rainey, K.M., 2015. NAM: association studies in multiple populations. Bioinformatics, 31(23), pp.3862-3864.

Song, Q., Yan, L., Quigley, C., Jordan, B.D., Fickus, E., Schroeder, S., Song, B.H., Charles An, Y.Q., Hyten, D., Nelson, R. and Rainey, K., 2017. Genetic characterization of the soybean nested association mapping population. The Plant Genome, 10(2), pp.plantgenome2016-10.

Xavier, A., Jarquin, D., Howard, R., Ramasubramanian, V., Specht, J.E., Graef, G.L., Beavis, W.D., Diers, B.W., Song, Q., Cregan, P.B. and Nelson, R., 2018. Genome-wide analysis of grain yield stability and environmental interactions in a multiparental soybean population. G3: Genes, Genomes, Genetics, 8(2), pp.519-529.

Diers, B.W., Specht, J., Rainey, K.M., Cregan, P., Song, Q., Ramasubramanian, V., Graef, G., Nelson, R., Schapaugh, W., Wang, D. and Shannon, G., 2018. Genetic architecture of soybean yield and agronomic traits. G3: Genes, Genomes, Genetics, 8(10), pp.3367-3375.

Examples

data(soy)

mas documentation built on May 29, 2024, 7:34 a.m.