R/data.R

In matrixset: Creating, Manipulating and Annotating Matrix Ensemble

#' Fake Final Exam Results of School Students Before and After Remedial Courses
#'
#' @format A `matrixset` of 20 rows and 3 columns
#' The object contains two matrices, one for the failure results (matrix named
#' `failure`) and one for the results after remedial classes (matrix named
#' `remedial`). Each matrix has results for 20 students and 3 classes:
#' * Mathematics
#' * English
#' * Science
#'
#' The object has been annotated both for rows (students) and columns (courses).
#' Each students has been annotated for the following information:
#' \describe{
#'   \item{class}{Group, or class, in which the student was part of}
#'   \item{teacher}{Professor that gave the remedial course}
#'   \item{previous_year_score}{Score the student had in the previous level of
#'   the same class}
#' }
#'
#' Each course has been annotated for the following information:
#' \describe{
#'   \item{national_average}{National average of all students for the course}
#'   \item{school_average}{Average of the school's students for the course}
#'   \item{program}{Program in which the course is given}
#' }
#'
"student_results"




#' Table S1 and S2 of MRMPlus Paper in `matrixset` Format
#'
#' @format A `matrixset` of 30 rows and 45 columns
#' The object contains four matrices:
#' \describe{
#'   \item{light_area}{Peak area of light peptides.}
#'   \item{heavy_area}{Peak area of heavy peptides.}
#'   \item{light_rt}{Retention time of light peptides.}
#'   \item{heavy_rt}{Retention time of heavy peptides.}
#' }
#'
#' The column names, analytes, are a combination of peptide sequence and
#' fragment ion. Rownames are the replicate names.
#'
#' @source Aiyetan P, Thomas SN, Zhang Z, Zhang H. MRMPlus: an open source quality
#' control and assessment tool for SRM/MRM assay development. BMC Bioinformatics.
#' 2015 Dec 12;16:411. doi: 10.1186/s12859-015-0838-z. PMID: 26652794; PMCID: PMC4676880.
"mrm_plus2015"