R/mauricer.R

In mauricer: Work with 'BEAST2' Packages

#' mauricer: Install BEAST2 packages.
#'
#' 'BEAST2' (<http://www.beast2.org>) is a widely used
#' Bayesian phylogenetic tool, that uses DNA/RNA/protein data
#' and many model priors to create a posterior of jointly estimated
#' phylogenies and parameters.
#'
#' 'BEAST2' is commonly accompanied by 'BEAUti 2' (<http://www.beast2.org>),
#' which, among others, allows one to install 'BEAST2' package.
#' This package allows to install 'BEAST2' packages from 'R'.
#'
#' * \link{get_beast2_pkg_names}: get the names of all BEAST2 packages
#' * \link{install_beast2_pkg}: install a BEAST2 package
#' * \link{is_beast2_pkg_installed}: determine if a BEAST2 package is installed
#' * \link{uninstall_beast2_pkg}: uninstall a BEAST2 package
#'
#' @seealso
#' \link{mauricer} is part of the \code{babette} package suite:
#' \itemize{
#'   \item{
#'     \code{babette}: work with BEAST2
#'   }
#'   \item{
#'     \link[beautier]{beautier}: create BEAST2 input files
#'   }
#'   \item{
#'     \link[beastier]{beastier}: run BEAST2
#'   }
#'   \item{
#'     \link{mauricer}: install BEAST2 packages
#'   }
#'   \item{
#'     \link[tracerer]{tracerer}: parse and analyse BEAST2 output
#'   }
#' }
#' @docType package
#' @name mauricer
#' @import beastier
NULL