mbX: A Comprehensive Microbiome Data Processing Pipeline

Provides tools for cleaning, processing, and preparing microbiome sequencing data (e.g., 16S rRNA) for downstream analysis. Supports CSV, TXT, and 'Excel' file formats. The main function, ezclean(), automates microbiome data transformation, including format validation, transposition, numeric conversion, and metadata integration. Also ensures efficient handling of taxonomic levels, resolves duplicated taxa entries, and outputs a well-structured, analysis-ready dataset.

Package details

AuthorUtsav Lamichhane [aut, cre]
MaintainerUtsav Lamichhane <utsav.lamichhane@gmail.com>
LicenseMIT + file LICENSE
Version0.1.3
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("mbX")

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mbX documentation built on April 3, 2025, 8:59 p.m.