View source: R/set_mcbette_state.R
set_mcbette_state | R Documentation |
Set the mcbette state to having BEAST2 installed with or without installing the BEAST2 NS package.
set_mcbette_state(
mcbette_state,
beast2_folder = beastier::get_default_beast2_folder(),
verbose = FALSE
)
mcbette_state |
the mcbette state, which is a list with the following elements:
|
beast2_folder |
the folder where the BEAST2 is installed. Note that this is not the folder where the BEAST2 executable is installed: the BEAST2 executable is in a subfolder. Use get_default_beast2_folder to get the default BEAST2 folder. Use get_default_beast2_bin_path to get the full path to the default BEAST2 executable. Use get_default_beast2_jar_path to get the full path to the default BEAST2 jar file. |
verbose |
if TRUE show debug output |
Nothing.
In newer versions of BEAST2, BEAST2 comes pre-installed with the BEAST2 NS package. For such a version, one cannot install BEAST2 without NS. A warning will be issues if one intends to only install BEAST2 (i.e. without the BEAST2 NS package) and gets the BEAST2 NS package installed as a side effect as well.
Also, installing or uninstalling a BEAST2 package from a BEAST2 installation will affect all installations.
Use get_mcbette_state to get the current mcbette state
Use check_mcbette_state to check the current mcbette state
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