mcclust: Process an MCMC Sample of Clusterings

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Implements methods for processing a sample of (hard) clusterings, e.g. the MCMC output of a Bayesian clustering model. Among them are methods that find a single best clustering to represent the sample, which are based on the posterior similarity matrix or a relabelling algorithm.

Author
Arno Fritsch
Date of publication
2012-07-23 10:35:32
Maintainer
Arno Fritsch <arno.fritsch@tu-dortmund.de>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

arandi
(Adjusted) Rand Index for Clusterings
cls.draw1.5
Sample of Clusterings from Posterior Distribution of Bayesian...
cls.draw2
Sample of Clusterings from Posterior Distribution of Bayesian...
cltoSim
Compute Similarity Matrix for a Clustering and vice versa
comp.psm
Estimate Posterior Similarity Matrix
maxpear
Maximize/Compute Posterior Expected Adjusted Rand Index
mcclust-package
Process MCMC Sample of Clusterings.
medv
Clustering Method of Medvedovic
minbinder
Minimize/Compute Posterior Expectation of Binders Loss...
norm.label
Norm Labelling of a Clustering
relabel
Stephens' Relabelling Algorithm for Clusterings
vi.dist
Variation of Information Distance for Clusterings
Ysim1.5
Simulated 3-dimensional Normal Data Containing 8 Clusters
Ysim2
Simulated 3-dimensional Normal Data Containing 8 Clusters

Files in this package

mcclust
mcclust/MD5
mcclust/R
mcclust/R/pear.R
mcclust/R/comp.psm.R
mcclust/R/binder.R
mcclust/R/mcclust-internal.R
mcclust/R/maxpear.R
mcclust/R/cltoSim.R
mcclust/R/minbinder.R
mcclust/R/arandi.R
mcclust/R/medv.R
mcclust/R/laugreen.R
mcclust/R/vi.dist.R
mcclust/R/norm.label.R
mcclust/R/relabel.R
mcclust/R/Simtocl.R
mcclust/man
mcclust/man/medv.Rd
mcclust/man/minbinder.Rd
mcclust/man/cltoSim.Rd
mcclust/man/norm.label.Rd
mcclust/man/cls.draw1.5.Rd
mcclust/man/mcclust-package.Rd
mcclust/man/Ysim1.5.Rd
mcclust/man/arandi.Rd
mcclust/man/cls.draw2.Rd
mcclust/man/vi.dist.Rd
mcclust/man/comp.psm.Rd
mcclust/man/relabel.Rd
mcclust/man/Ysim2.Rd
mcclust/man/maxpear.Rd
mcclust/src
mcclust/src/comp_psm.c
mcclust/NAMESPACE
mcclust/DESCRIPTION
mcclust/data
mcclust/data/cls.draw2.RData
mcclust/data/cls.draw1.5.RData
mcclust/data/Ysim1.5.RData
mcclust/data/Ysim2.RData