mcemGLM: Maximum Likelihood Estimation for Generalized Linear Mixed Models
Version 1.1

Maximum likelihood estimation for generalized linear mixed models via Monte Carlo EM.

Browse man pages Browse package API and functions Browse package files

AuthorFelipe Acosta Archila
Date of publication2015-11-29 09:06:45
MaintainerFelipe Acosta Archila <acosta@umn.edu>
LicenseGPL (>= 2)
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mcemGLM")

Man pages

anova.mcemGLMM: Anova method for mcemGLMM objects
coef.mcemGLMM: Anova method for mcemGLMM objects
contrasts.mcemGLMM: Contrast estimation for mcemGLMM objects
covMat.mcemGLMM: Anova method for mcemGLMM objects
epilepsy: Epilesy Data
exdata: Example data
mcemGLMM: Generalized Linear Mixed Models Estimation
mcemGLMMext: Extending the Iterations of a Model Fitted with mcemGLMM
mcemGLM-package: Generalized Linear Mixed Model Estimation via Monte Carlo EM
predict.mcemGLMM: Predict method for mcemGLMM objects
ranef.mcemGLMM: Anova method for mcemGLMM objects
residuals.mcemGLMM: Residual extraction method for mcemGLMM objects
salamander: Salamander Data
simData: Data used for fitting examples
summary.mcemGLMM: Summary method for mcemGLMM objects

Functions

MCMCloglikelihoodGammaCpp_n Source code
MCMCloglikelihoodGammaCpp_t Source code
MCMCloglikelihoodLogitCpp_n Source code
MCMCloglikelihoodLogitCpp_t Source code
MCMCloglikelihoodNegBinomCpp_n Source code
MCMCloglikelihoodNegBinomCpp_t Source code
MCMCloglikelihoodPoissonCpp_n Source code
MCMCloglikelihoodPoissonCpp_t Source code
anova Man page
anova.mcemGLMM Man page Source code
coef Man page
coef.mcemGLMM Man page Source code
constructSigma Source code
contrasts.mcemGLMM Man page Source code
covMat Man page
covMat.mcemGLMM Man page Source code
epilepsy Man page
exdata Man page
iMatrixDiagCpp_n Source code
iMatrixDiagCpp_t Source code
iMatrixDiagGammaCpp_n Source code
iMatrixDiagGammaCpp_t Source code
iMatrixDiagNegBinomCpp_n Source code
iMatrixDiagNegBinomCpp_t Source code
iMatrixDiagPoissonCpp_n Source code
iMatrixDiagPoissonCpp_t Source code
ldmn Source code
ldmt Source code
loglikelihoodGammaCpp_n Source code
loglikelihoodGammaCpp_t Source code
loglikelihoodGammaGradientCpp_n Source code
loglikelihoodGammaGradientCpp_t Source code
loglikelihoodGammaHessianCpp_n Source code
loglikelihoodGammaHessianCpp_t Source code
loglikelihoodLogitCpp_n Source code
loglikelihoodLogitCpp_t Source code
loglikelihoodLogitGradientCpp_n Source code
loglikelihoodLogitGradientCpp_t Source code
loglikelihoodLogitHessianCpp_n Source code
loglikelihoodLogitHessianCpp_t Source code
loglikelihoodNegBinomCpp_n Source code
loglikelihoodNegBinomCpp_t Source code
loglikelihoodNegBinomGradientCpp_n Source code
loglikelihoodNegBinomGradientCpp_t Source code
loglikelihoodNegBinomHessianCpp_n Source code
loglikelihoodNegBinomHessianCpp_t Source code
loglikelihoodPoissonCpp_n Source code
loglikelihoodPoissonCpp_t Source code
loglikelihoodPoissonGradientCpp_n Source code
loglikelihoodPoissonGradientCpp_t Source code
loglikelihoodPoissonHessianCpp_n Source code
loglikelihoodPoissonHessianCpp_t Source code
margloglikelihoodLogitCpp_n Source code
margloglikelihoodLogitCpp_t Source code
mcemGLM Man page
mcemGLM-package Man page
mcemGLMM Man page Source code
mcemGLMMext Man page Source code
mcemMLEGamma_n Source code
mcemMLEGamma_t_fixed_df Source code
mcemMLENegBinom_n Source code
mcemMLENegBinom_t_fixed_df Source code
mcemMLEPoisson_n Source code
mcemMLEPoisson_t_fixed_df Source code
mcemMLE_n Source code
mcemMLE_t_fixed_df Source code
min0 Source code
predict Man page
predict.mcemGLMM Man page Source code
qFunctionCpp_n Source code
qFunctionCpp_t Source code
qFunctionDiagCpp_n Source code
qFunctionDiagCpp_t Source code
qFunctionDiagGammaCpp_n Source code
qFunctionDiagGammaCpp_t Source code
qFunctionDiagNegBinomCpp_n Source code
qFunctionDiagNegBinomCpp_t Source code
qFunctionDiagPoissonCpp_n Source code
qFunctionDiagPoissonCpp_t Source code
ranef Man page
ranef.mcemGLMM Man page Source code
residuals Man page
residuals.mcemGLMM Man page Source code
salamander Man page
simData Man page
summary Man page
summary.mcemGLMM Man page Source code
toMaxDiagGamma_n Source code
toMaxDiagGamma_t Source code
toMaxDiagNegBinom_n Source code
toMaxDiagNegBinom_t Source code
toMaxDiagPoisson_n Source code
toMaxDiagPoisson_t Source code
toMaxDiag_n Source code
toMaxDiag_t Source code
uSamplerCpp Source code
uSamplerCpp_n Source code
uSamplerGammaCpp_n Source code
uSamplerGammaCpp_t Source code
uSamplerNegBinomCpp_n Source code
uSamplerNegBinomCpp_t Source code
uSamplerPoissonCpp_n Source code
uSamplerPoissonCpp_t Source code

Files

inst
inst/doc
inst/doc/mcemGLM-vignette.R
inst/doc/mcemGLM-vignette.pdf
inst/doc/mcemGLM-vignette.Rnw
src
src/MCMCloglikelihoodNegBinom_t.cpp
src/loglikelihoodGammaGradient_n.cpp
src/uSampler_n.cpp
src/Makevars
src/iMatrixDiag_n.cpp
src/loglikelihoodNegBinom_t.cpp
src/loglikelihoodLogit_n.cpp
src/qFunctionDiag_n.cpp
src/loglikelihoodNegBinom_n.cpp
src/loglikelihoodNegBinomGradient_n.cpp
src/qFunctionDiagGamma_n.cpp
src/qFunctionDiagPoisson_t.cpp
src/loglikelihoodLogitGradient_t.cpp
src/loglikelihoodGammaHessian_n.cpp
src/iMatrixDiagPoisson_n.cpp
src/iMatrixDiag_t.cpp
src/iMatrixDiagGamma_t.cpp
src/loglikelihoodGammaHessian_t.cpp
src/uSamplerGamma_t.cpp
src/loglikelihoodPoissonHessian_t.cpp
src/loglikelihoodLogitHessian_t.cpp
src/mcemGLM.h
src/mcemGLMutil.cpp
src/MCMCloglikelihoodGamma_n.cpp
src/MCMCloglikelihoodGamma_t.cpp
src/loglikelihoodNegBinomHessian_t.cpp
src/loglikelihoodLogitHessian_n.cpp
src/loglikelihoodPoisson_t.cpp
src/MCMCloglikelihoodLogit_n.cpp
src/MCMCloglikelihoodPoisson_n.cpp
src/iMatrixDiagNegBinom_t.cpp
src/loglikelihoodNegBinomHessian_n.cpp
src/margloglikelihoodLogit_n.cpp
src/loglikelihoodLogitGradient_n.cpp
src/qFunction.cpp
src/loglikelihoodPoissonHessian_n.cpp
src/loglikelihoodGamma_n.cpp
src/uSamplerGamma_n.cpp
src/uSamplerPoisson_n.cpp
src/uSamplerNegBinom_t.cpp
src/uSamplerPoisson_t.cpp
src/margloglikelihoodLogit_t.cpp
src/uSamplerNegBinom_n.cpp
src/loglikelihoodGamma_t.cpp
src/MCMCloglikelihoodNegBinom_n.cpp
src/loglikelihoodGammaGradient_t.cpp
src/uSampler.cpp
src/qFunctionDiagGamma_t.cpp
src/loglikelihoodPoissonGradient_n.cpp
src/iMatrixDiagPoisson_t.cpp
src/qFunctionDiag_t.cpp
src/MCMCloglikelihoodLogit_t.cpp
src/qFunctionDiagPoisson_n.cpp
src/loglikelihoodLogit_t.cpp
src/qFunctionDiagNegBinom_n.cpp
src/Makevars.win
src/qFunction_n.cpp
src/RcppExports.cpp
src/loglikelihoodPoissonGradient_t.cpp
src/iMatrixDiagGamma_n.cpp
src/qFunctionDiagNegBinom_t.cpp
src/loglikelihoodNegBinomGradient_t.cpp
src/loglikelihoodPoisson_n.cpp
src/MCMCloglikelihoodPoisson_t.cpp
src/iMatrixDiagNegBinom_n.cpp
NAMESPACE
data
data/salamander.rdata
data/exdata.rdata
data/simData.rdata
data/epilepsy.rdata
R
R/mcemGLMMext.R
R/mcemMLE_n.R
R/contrasts.mcemGLMM.R
R/mcemMLEPoisson_n.R
R/toMaxDiag_t.R
R/coef.mcemGLMM.R
R/mcemMLENegBinom_n.R
R/covMat.mcemGLMM.R
R/toMaxDiag_n.R
R/toMaxDiagPoisson_t.R
R/toMaxDiagGamma_n.R
R/residuals.mcemGLMM.R
R/ranef.mcemGLMM.R
R/mcemMLE_t_fixed_df.R
R/anova.mcemGLMM.R
R/RcppExports.R
R/mcemMLENegBinom_t_fixed_df.R
R/toMaxDiagGamma_t.R
R/toMaxDiagNegBinom_n.R
R/mcemMLEGamma_t_fixed_df.R
R/toMaxDiagPoisson_n.R
R/mcemMLEGamma_n.R
R/predict.mcemGLMM.R
R/toMaxDiagNegBinom_t.R
R/constructSigma.R
R/summary.mcemGLMM.R
R/mcemMLEPoisson_t_fixed_df.R
R/mcemGLMM.R
vignettes
vignettes/references.bib
vignettes/mcemGLM-vignette.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/contrasts.mcemGLMM.Rd
man/summary.mcemGLMM.Rd
man/mcemGLMMext.Rd
man/covMat.mcemGLMM.Rd
man/anova.mcemGLMM.Rd
man/mcemGLMM.Rd
man/epilepsy.Rd
man/residuals.mcemGLMM.Rd
man/coef.mcemGLMM.Rd
man/mcemGLM-package.Rd
man/exdata.Rd
man/simData.Rd
man/ranef.mcemGLMM.Rd
man/predict.mcemGLMM.Rd
man/salamander.Rd
mcemGLM documentation built on May 19, 2017, 10:39 a.m.