mclcar: Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods

The likelihood of direct CAR models and Binomial and Poisson GLM with latent CAR variables are approximated by the Monte Carlo likelihood. The Maximum Monte Carlo likelihood estimator is found either by an iterative procedure of directly maximising the Monte Carlo approximation or by a response surface design method.

Author
Zhe Sha [aut, cre]
Date of publication
2016-11-30 14:55:20
Maintainer
Zhe Sha <zhesha1006@gmail.com>
License
GPL (>= 2)
Version
0.1-8

View on CRAN

Man pages

CAR.simLM
Simulate samples from a CAR model.
loglik.dCAR
Likelihood computing and parameter estimation for a direct...
mclcar-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("mclcar")}
mcl.dCAR
Monte Carlo likelihood calculation for direct CAR models.
mcl.glm
Monte Carlo likelihood calculation for glm with latent CAR...
mcl.HCAR
The Monte Carlo likelihood function of the HCAR model.
OptimMCL
Iterative procedure for maximising the Monte Carlo likelihood
OptimMCL.HCAR
Iterative procedure for maximising the Monte Carlo likelihood...
plot.rsmMCL
Plot the fitted response surfaces
postZ
Sampling the CAR latent variables given the Binomial or...
rsmMCL
Response surface method for maximising the Monte Carlo...
ScotCancer
Scottish lip cancer dataset from Clayton and Kaldor (1987)
scotplot
Scottish lip cancer dataset from Clayton and Kaldor (1987)...
sim.HCAR
Simulate samples from a HCAR model.
summary.OptimMCL
Summary the output from the iterative procedure of maximising...
summary.OptimMCL.HCAR
Summary the output from the iterative procedure of maximising...
summary.rsmMCL
Summary the output from the response surface method of...

Files in this package

mclcar
mclcar/inst
mclcar/inst/doc
mclcar/inst/doc/mclcar_vignette.pdf
mclcar/inst/doc/mclcar_vignette.R
mclcar/inst/doc/mclcar_vignette.Rnw
mclcar/NAMESPACE
mclcar/data
mclcar/data/ScotCancer.rda
mclcar/data/scotplot.rda
mclcar/R
mclcar/R/mcl.glm.R
mclcar/R/plot.rsmMCL.R
mclcar/R/rsmMCL.R
mclcar/R/loglik.dCAR.R
mclcar/R/postZ.R
mclcar/R/rsmSub.R
mclcar/R/CAR.simLM.R
mclcar/R/mcl.dCAR.R
mclcar/R/OptimMCL.R
mclcar/R/mcl.pois.R
mclcar/R/mcl.HCAR.R
mclcar/R/mcl.bin.R
mclcar/R/OptimMCL.HCAR.R
mclcar/R/summary.rsmMCL.R
mclcar/R/summary.OptimMCL.HCAR.R
mclcar/R/HCAR.sim.R
mclcar/R/summary.OptimMCL.R
mclcar/R/postZsub.R
mclcar/vignettes
mclcar/vignettes/mclcar_vignette.Rnw
mclcar/vignettes/references.bib
mclcar/MD5
mclcar/build
mclcar/build/vignette.rds
mclcar/build/partial.rdb
mclcar/DESCRIPTION
mclcar/man
mclcar/man/ScotCancer.Rd
mclcar/man/loglik.dCAR.Rd
mclcar/man/summary.OptimMCL.HCAR.Rd
mclcar/man/plot.rsmMCL.Rd
mclcar/man/postZ.Rd
mclcar/man/summary.OptimMCL.Rd
mclcar/man/sim.HCAR.Rd
mclcar/man/mcl.glm.Rd
mclcar/man/CAR.simLM.Rd
mclcar/man/mcl.dCAR.Rd
mclcar/man/mcl.HCAR.Rd
mclcar/man/scotplot.Rd
mclcar/man/rsmMCL.Rd
mclcar/man/OptimMCL.Rd
mclcar/man/mclcar-package.Rd
mclcar/man/summary.rsmMCL.Rd
mclcar/man/OptimMCL.HCAR.Rd