Man pages for mcmcsae
Markov Chain Monte Carlo Small Area Estimation

acceptance_ratesReturn Metropolis-Hastings acceptance rates
ac_fftCompute autocovariance or autocorrelation function via...
aggrMatrixUtility function to construct a sparse aggregation matrix...
anyNA-tabMatrix-methodS4 method for generic 'anyNA' and signature 'tabMatrix'
CGSolve Ax=b by preconditioned conjugate gradients
combine_chainsCombine multiple mcdraws objects into a single one by...
combine_itersCombine multiple mcdraws objects into a single one by...
computeDesignMatrixCompute a list of design matrices for all terms in a model...
compute_GMRF_matricesCompute (I)GMRF incidence, precision and restriction matrices...
correlationCorrelation structures
create_samplerCreate a sampler object
create_TMVN_samplerSet up a sampler object for sampling from a possibly...
genCreate a model component object for a generic random effects...
generate_dataGenerate a data vector according to a model
get_drawExtract a list of parameter values for a single draw
glregCreate a model object for group-level regression effects...
labelsGet and set the variable labels of a draws component object...
Matrix-methodsS4 methods for products of matrix objects
matrix-vectorFast matrix-vector multiplications
maximize_llhMaximize log-likelihood defined inside a sampler function
MCMC-diagnosticsCompute MCMC diagnostic measures
MCMC-object-conversionConvert a draws component object to another format
mcmcsae_exampleGenerate artificial data according to an additive...
mcmcsae-familyFunctions for specifying a sampling distribution and link...
mcmcsae-packageMarkov Chain Monte Carlo Small Area Estimation
MCMCsimRun a Markov Chain Monte Carlo simulation
mecCreate a model component object for a regression (fixed...
model-information-criteriaCompute DIC, WAIC and leave-one-out cross-validation model...
model_matrixCompute possibly sparse model matrix
nchains-ndraws-nvarsGet the number of chains, samples per chain or the number of...
par_namesGet the parameter names from an mcdraws object
plot_coefPlot a set of model coefficients or predictions with...
plot.dcTrace, density and autocorrelation plots for (parameters of...
plot.mcdrawsTrace, density and autocorrelation plots
posterior-momentsGet means or standard deviations of parameters from the MCMC...
predict.mcdrawsGenerate draws from the predictive distribution
pr_expCreate an object containing information about exponential...
pr_fixedCreate an object containing information about a degenerate...
pr_gigCreate an object containing information about Generalized...
print.dc_summaryDisplay a summary of a 'dc' object
print.mcdraws_summaryPrint a summary of MCMC simulation results
pr_invchisqCreate an object containing information about inverse...
pr_invwishartCreate an object containing information about an inverse...
read_drawsRead MCMC draws from a file
regCreate a model component object for a regression (fixed...
residuals-fitted-valuesExtract draws of fitted values or residuals from an mcdraws...
SBC_testSimulation based calibration
set_optsSet global options relating to computational details
setup_CG_samplerSet up conjugate gradient sampler
setup_clusterSet up a cluster for parallel computing
stop_clusterStop a cluster
subset.dcSelect a subset of chains, samples and parameters from a...
summary.dcSummarize a draws component (dc) object
summary.mcdrawsSummarize an mcdraws object
tabMatrix-indexingS4 method for row and column subsetting a 'tabMatrix'
transform_dcTransform one or more draws component objects into a new one...
vfacCreate a model component object for a variance factor...
vregCreate a model component object for a regression component in...
weights.mcdrawsExtract weights from an mcdraws object
mcmcsae documentation built on Oct. 10, 2021, 5:07 p.m.