summary.medicalcoder_comorbidities_with_subconditions: Summaries of Comorbidities with Subconditions

In medicalcoder: A Unified and Longitudinally Aware Framework for ICD-Based Comorbidity Assessment

Summaries of Comorbidities with Subconditions

Description

Build summaries (counts and percentages) for each Pediatric Complex Chronic Condition (PCCC) condition and subcondition.

Usage

## S3 method for class 'medicalcoder_comorbidities_with_subconditions'
summary(object, ...)

Arguments

object	a medicalcoder_comorbidities_with_subconditions object generated by calling comorbidities() with subconditions = TRUE. This is currently only applicable to PCCC.
...	additional parameters, not currently used

Value

a data.frame with five columns.

1. condition the primary condition

2. subcondition the subcondition(s) within the condition. There will be a row where subcondition is NA which is used to report the count and percent_of_cohort for the condition overall.

3. count the number of rows in object with the applicable condition and subcondition.

4. percent_of_cohort: a numeric value within [0, 100] for the percent of rows in object with the flagged condition and subcondition.

5. percent_of_those_with_condition: a numeric value within [0, 100] for the subset of rows in object with the primary condition and the flagged subcondition. Will be NA for the primary condition.

See Also

comorbidities(), vignette(topic = "pccc", package = "medicalcoder")

Examples

pccc_v3.1_subcondition_results <-
  comorbidities(data = mdcr,
                icd.codes = "code",
                id.vars = "patid",
                dx.var = "dx",
                method = "pccc_v3.1",
                flag.method = 'current',
                poa = 1,
                subconditions = TRUE)
summary(pccc_v3.1_subcondition_results)

medicalcoder documentation built on Feb. 22, 2026, 5:08 p.m.