memgene: Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps

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Memgene can detect relatively weak spatial genetic patterns by using Moran's Eigenvector Maps (MEM) to extract only the spatial component of genetic variation. Memgene has applications in landscape genetics where the movement and dispersal of organisms are studied using neutral genetic variation.

Author
Pedro Peres-Neto, Paul Galpern
Date of publication
2014-06-06 02:10:07
Maintainer
Paul Galpern <pgalpern@ucalgary.ca>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

codomToPropShared
Find proportion of shared alleles genetic distances from a...
memgene-package
Spatial pattern detection in genetic distance data using...
mgForward
Forward selection of MEM eigenvectors against genetic...
mgLandscape
Landscape genetic analysis using MEMGENE
mgMap
Visualization of MEMGENE variables
mgMEM
Extraction of MEM eigenvectors given distances among sampling...
mgQuick
Memgene analysis of genetic distance data (main interface for...
mgRDA
Extraction of MEMGENE variables using redundancy analysis...
mgVarPart
Variation partitioning of the genetic distance matrix

Files in this package

memgene
memgene/inst
memgene/inst/extdata
memgene/inst/extdata/river.csv
memgene/inst/extdata/river.asc
memgene/inst/extdata/fragmented.csv
memgene/inst/extdata/panmixia.csv
memgene/inst/extdata/memgeneTutorial.Rdata
memgene/inst/extdata/caribou.csv
memgene/inst/extdata/radial.asc
memgene/inst/extdata/fragmented.asc
memgene/inst/extdata/radial.csv
memgene/inst/extdata/uniform.csv
memgene/inst/doc
memgene/inst/doc/memgeneTutorial.Rnw
memgene/inst/doc/memgeneTutorial.pdf
memgene/inst/doc/memgeneTutorial.R
memgene/NAMESPACE
memgene/R
memgene/R/print.mgLandscape.R
memgene/R/mgRDA.R
memgene/R/mgMEM.R
memgene/R/mgLandscape.R
memgene/R/mgMap.R
memgene/R/mgVarPart.R
memgene/R/mgQuick.R
memgene/R/codomToPropShared.R
memgene/R/mgForward.R
memgene/vignettes
memgene/vignettes/memgeneTutorial.Rnw
memgene/MD5
memgene/build
memgene/build/vignette.rds
memgene/DESCRIPTION
memgene/man
memgene/man/mgRDA.Rd
memgene/man/mgLandscape.Rd
memgene/man/mgVarPart.Rd
memgene/man/memgene-package.Rd
memgene/man/mgQuick.Rd
memgene/man/mgForward.Rd
memgene/man/mgMap.Rd
memgene/man/mgMEM.Rd
memgene/man/codomToPropShared.Rd