vcov.lmerMod: Extract Variance-Covariance Matrix of all Parameters for...

In merDeriv: Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models

Extract Variance-Covariance Matrix of all Parameters for Linear Mixed Effects Models

Description

This function calculates the variance-covariance matrix for all parameters (fixed, random effect, and residual) in a linear mixed effects model of class lmerMod.

Usage

## S3 method for class 'lmerMod'
vcov(object, ...)

Arguments

object	An object of class lmerMod.
...	additional arguments, including full, information and ranpar (full = FALSE, information = "expected" and ranpar = "var" are default; see details).

Value

A p by p variance-covariance matrix, where p represents the number of parameters. If full = FALSE, returns the variance-covariance matrix of only fixed effect parameters. If full = TRUE , returns the variance-covariance matrix for all fitted parameters (including fixed effect parameters, random effect (co)variances, and residual variance. If information = "expected", the variance-covariance matrix is based on the inversion of Fisher information matrix. If information = "observed", the variance-covariance matrix is based on the observed Fisher information, which is the negative of Hessian matrix. If ranpar = "var", the random effects are parameterized as variance/covariance; If ranpar = "sd", the random effects are parameterized as standard deviation/correlation.

References

Wang, T. & Merkle, E. C. (2018). Derivative Computations and Robust Standard Errors for Linear Mixed Effects Models in lme4. Journal of Statistical Software, 87(1), 1-16. doi: 10.18637/jss.v087.c01

Examples

## Not run: 
# The sleepstudy example
lme4fit <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy, REML = FALSE)

# variance covariance matrix for all parameters
vcov(lme4fit, full = TRUE, ranpar = "var")

## End(Not run)

merDeriv documentation built on March 18, 2022, 6:13 p.m.