oligo.freq: Oligonucleotide Frequency
In metaCluster: Metagenomic Clustering
oligo.freq R Documentation
Oligonucleotide Frequency
Description
This function will calculate oligonucleotide frequency of each sequence or contig from a FASTA file.
Usage
oligo.freq(fasta_file, f)
Arguments
fasta_file
Name of the fasta or multifasta file
f
Length of the oligonucleotide
Value
Frequency value of each oligonucleotide of length specified by the user
Author(s)
Dipro Sinha <diprosinha@gmail.com>,Sayanti Guha Majumdar, Anu Sharma, Dwijesh Chandra Mishra
Examples
library(metaCluster)
freq <- oligo.freq(fasta_file = system.file("extdata/sample1.fasta", package = "metaCluster"),4)
metaCluster documentation built on June 22, 2024, 10:21 a.m.
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| oligo.freq | R Documentation |
Oligonucleotide Frequency
Description
This function will calculate oligonucleotide frequency of each sequence or contig from a FASTA file.
Usage
oligo.freq(fasta_file, f)
Arguments
fasta_file |
Name of the fasta or multifasta file |
f |
Length of the oligonucleotide |
Value
Frequency value of each oligonucleotide of length specified by the user
Author(s)
Dipro Sinha <diprosinha@gmail.com>,Sayanti Guha Majumdar, Anu Sharma, Dwijesh Chandra Mishra
Examples
library(metaCluster)
freq <- oligo.freq(fasta_file = system.file("extdata/sample1.fasta", package = "metaCluster"),4)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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