metaRNASeq: Meta-analysis of RNA-seq data

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Implementation of two p-value combination techniques (inverse normal and Fisher methods). A vignette is provided to explain how to perform a meta-analysis from two independent RNA-seq experiments.

Author
Guillemette Marot, Florence Jaffrezic, Andrea Rau
Date of publication
2015-01-26 20:33:13
Maintainer
Guillemette Marot <guillemette.marot@inria.fr>
License
GPL
Version
1.0.2

View on CRAN

Man pages

dispFuncs
Gamma regression parameters describing the mean-dispersion...
fishercomb
P-value combination using Fisher's method
IDD.IRR
Integration-driven Discovery and Integration-driven Revision...
invnorm
P-value combination using the inverse normal method
metaRNASeq-package
Meta-analysis for RNA-seq data.
param
Mean simulation parameters
rawpval
Simulated p-values
sim.function
Simulation of multiple RNA-seq experiments

Files in this package

metaRNASeq
metaRNASeq/inst
metaRNASeq/inst/CITATION
metaRNASeq/inst/NEWS
metaRNASeq/inst/doc
metaRNASeq/inst/doc/metaRNASeq.Rnw
metaRNASeq/inst/doc/metaRNASeq.pdf
metaRNASeq/inst/doc/metaRNASeq.R
metaRNASeq/NAMESPACE
metaRNASeq/data
metaRNASeq/data/dispFuncs.rda
metaRNASeq/data/param.rda
metaRNASeq/data/rawpval.rda
metaRNASeq/R
metaRNASeq/R/invnorm.R
metaRNASeq/R/sim.function.R
metaRNASeq/R/IDD.IRR.R
metaRNASeq/R/fishercomb.R
metaRNASeq/vignettes
metaRNASeq/vignettes/metaRNASeq.Rnw
metaRNASeq/vignettes/metaRNASeq.bib
metaRNASeq/MD5
metaRNASeq/build
metaRNASeq/build/vignette.rds
metaRNASeq/DESCRIPTION
metaRNASeq/man
metaRNASeq/man/rawpval.Rd
metaRNASeq/man/param.Rd
metaRNASeq/man/fishercomb.Rd
metaRNASeq/man/metaRNASeq-package.Rd
metaRNASeq/man/sim.function.Rd
metaRNASeq/man/dispFuncs.Rd
metaRNASeq/man/invnorm.Rd
metaRNASeq/man/IDD.IRR.Rd