plot.fes3d: Plot 3D free energy surface object

In metadynminer3d: Tools to Read, Analyze and Visualize Metadynamics 3D HILLS Files from 'Plumed'

Plot 3D free energy surface object

Description

'plot.fes3d' plots 3D free energy surface using .

Usage

## S3 method for class 'fes3d'
plot(x, xlab = NULL, ylab = NULL, zlab = NULL, 
  xlim = NULL, ylim = NULL, zlim = NULL, level = NULL,
  col = NULL, alpha = NULL, main = NULL, sub = NULL, fill = TRUE, ...)

Arguments

x	fes3d object.
xlab	a title for the x axis: see 'title'.
ylab	a title for the y axis: see 'title'.
zlab	a title for the z axis: see 'title'.
xlim	numeric vector of length 2, giving the x coordinates range.
ylim	numeric vector of length 2, giving the y coordinates range.
zlim	numeric vector of length 2, giving the z coordinates range.
main	an overall title for the plot: see 'title'.
sub	a sub title for the plot: see 'title'.
level	number or numeric vector of levels at which to draw 3D isosurface.
col	color of the free energy surface. It can be a single color or a vector with multiple colors for multiple 3D isosurfaces.
alpha	number or numeric vector of alpha levels (transparency) of 3D isosurfaces.
fill	a logical value indicating whether 3D isosurface is ploted as solid surface (True) or wireframe (False).
...	further arguments passed to or from other methods.

Examples

tfes3d<-fes(acealanme3d, imax=5000)
plot(tfes3d)

metadynminer3d documentation built on April 14, 2022, 5:08 p.m.