water_quality_analysis: Water quality analysis

In metrix: Water Quality Metrics Calculator

Water quality analysis

Description

This function performs all the calculations available in metrix package.

Usage

water_quality_analysis(dataset, store = FALSE, dec_c = ".", verbose = FALSE)

Arguments

dataset	A data.frame obtained from read_data.
store	A logical value indicating if the user want to store the results in a file.
dec_c	A character used for decimal separator on results file.
verbose	A logical value indicating if progress messages should be given.

Value

This function returns a list with the following components:

bioind_n	The numerical values of the biotic indexes.
bioind_c	The water quality class asign to each sample site according to the numerical value of the biotic index.
densimetrics	A data.frame with all the calculated density measures.
tolmetrics	A data.frame with all the calculated tolerance measures.
compmetrics	A data.frame with all the calculated composition measures.
trophmetrics	A data.frame with all the calculated trophic measures.
richmetrics	A data.frame with all the calculated richness measures.

Author(s)

Juan Manuel Cabrera and Julieta Capeletti.

See Also

read_data, biotic_ind, densi_metrics, icbrio_ind, tol_metrics, comp_metrics, troph_metrics, rich_metrics

Examples

#Load example data
example_data

#Run water_quality_analysis with that example_data
complete<-water_quality_analysis(example_data)

#Check results
complete$bioind_n
complete$bioind_c
complete$densimetrics
complete$tolmetrics
complete$compmetrics
complete$trophmetrics
complete$richmetrics

metrix documentation built on Nov. 12, 2022, 9:05 a.m.